Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N23
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    33   0.029
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    29   0.61 
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   4.3  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   7.6  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
 Frame = -3

Query: 668 ESIVGWWATGNEVTNHSSVIHEYYSRECREP------------VHVTXDTSLAGGRMGLR 525
           E +VGW+AT  ++   S++I   Y+    EP            VH+T +T ++   + ++
Sbjct: 100 EVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPHPCVHLTVNTDVS-SPLAIK 157

Query: 524 AYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQ 417
            YV  P+G+       C F P   T+   E    GL+
Sbjct: 158 TYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLK 194


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 93  KVSFSLSWSWVLIN--CANVTTISRSLTLEAKASEKVSLXKVRCGMCELQEG 242
           ++     WSW  +N  C  + +IS ++  E +    V++ K   G+CE++ G
Sbjct: 483 RIVVGTEWSWQNLNTLCWAIGSISGAMNEEMEKRFLVNVIKDLLGLCEMKRG 534


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 477 HVHSCRCHSHV 445
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 27  WSXSKLDVRSSLIYCSIHWEVNKVSFS 107
           W   K+D  +SLI  ++H   ++VS S
Sbjct: 277 WEAGKIDAMNSLIAQNLHTSASQVSLS 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,807
Number of Sequences: 5004
Number of extensions: 36668
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)