Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N23
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23...    66   2e-11
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741...    29   4.5  

>05_01_0034 -
           228939-229028,229117-229230,229309-229430,229827-230056,
           230458-230537,230641-230859
          Length = 284

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/89 (33%), Positives = 49/89 (55%)
 Frame = -3

Query: 668 ESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTXDTSLAGGRMGLRAYVCVPLGVPNG 489
           E IVGW++TG  V+  S++IH++YSRE + P+H+T DT    G   ++AY+   L + + 
Sbjct: 95  EVIVGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDR 154

Query: 488 KQGCMFTPVDVTLTCYEPEIVGLQVCQKT 402
                F  + + L   E   VG  + + T
Sbjct: 155 HLAAQFQEIPLDLRMLEAGKVGFDILKST 183


>07_03_1709 -
           28873172-28873327,28873519-28873584,28874067-28874127,
           28875406-28875462,28876301-28876531,28876685-28876799,
           28876897-28877136,28877222-28877316,28877406-28877585,
           28877663-28877839,28877920-28878890
          Length = 782

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 481 PCFPFGTPNGTQTYARKPIRPPASEVSXVTWTG 579
           P  PF +P  +  +AR P  P  +E+S    TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,822,444
Number of Sequences: 37544
Number of extensions: 267302
Number of successful extensions: 601
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)