Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N23
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    50   1e-06
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    28   7.0  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
 Frame = -3

Query: 668 ESIVGWWATGNEVTNHSSVIHEYYSRECRE--------PVHV-TXDTSLAGG---RMGLR 525
           E  VGW+ T +++T+   + H+YY R   E        P+ V T DT+ +G    RM +R
Sbjct: 88  EQPVGWFLTTSDITSSCLIYHDYYVRVITEASARRESPPIVVLTIDTTFSGDMSKRMPVR 147

Query: 524 AYVCVPLGVPN--GKQGCMFTPVDVTLTCYEPEIVGLQVCQK 405
           AY+    G+P   G    +F P+ V L  +  E+V +Q+ +K
Sbjct: 148 AYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGELVAMQLIEK 189


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 519  CLCTIRSAKWKARLHVHSCRCHSH 448
            C CT    +W   +H   CR H H
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVH 1579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,137,393
Number of Sequences: 27780
Number of extensions: 219066
Number of successful extensions: 517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)