Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N22
         (547 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D82361-3|BAA19555.1|  285|Homo sapiens MSSP-2 protein.                 30   4.6  
D82361-2|BAA19554.1|  288|Homo sapiens MSSP-2 protein.                 30   4.6  
D82351-1|BAA11561.1|  373|Homo sapiens MSSP-1 protein.                 30   4.6  
D28482-1|BAA05841.1|  403|Homo sapiens SCR2 protein.                   30   4.6  
BC018951-1|AAH18951.1|  406|Homo sapiens RNA binding motif, sing...    30   4.6  
BC012993-1|AAH12993.1|  403|Homo sapiens RNA binding motif, sing...    30   4.6  
BC012992-1|AAH12992.1|  403|Homo sapiens RNA binding motif, sing...    30   4.6  
AK128353-1|BAC87395.1|  189|Homo sapiens protein ( Homo sapiens ...    30   4.6  
AC092153-3|AAX93095.1|  205|Homo sapiens unknown protein.              30   4.6  

>D82361-3|BAA19555.1|  285|Homo sapiens MSSP-2 protein.
          Length = 285

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 316 PPFVYHPAAVYLPSMTHLFLSIMALRPSNMLTALA 212
           P  + HP AV  PSM H     M+L+P++M++ LA
Sbjct: 190 PYILQHPGAVLTPSMEH----TMSLQPASMISPLA 220


>D82361-2|BAA19554.1|  288|Homo sapiens MSSP-2 protein.
          Length = 288

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 316 PPFVYHPAAVYLPSMTHLFLSIMALRPSNMLTALA 212
           P  + HP AV  PSM H     M+L+P++M++ LA
Sbjct: 193 PYILQHPGAVLTPSMEH----TMSLQPASMISPLA 223


>D82351-1|BAA11561.1|  373|Homo sapiens MSSP-1 protein.
          Length = 373

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 316 PPFVYHPAAVYLPSMTHLFLSIMALRPSNMLTALA 212
           P  + HP AV  PSM H     M+L+P++M++ LA
Sbjct: 278 PYILQHPGAVLTPSMEH----TMSLQPASMISPLA 308


>D28482-1|BAA05841.1|  403|Homo sapiens SCR2 protein.
          Length = 403

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 316 PPFVYHPAAVYLPSMTHLFLSIMALRPSNMLTALA 212
           P  + HP AV  PSM H     M+L+P++M++ LA
Sbjct: 308 PYILQHPGAVLTPSMEH----TMSLQPASMISPLA 338


>BC018951-1|AAH18951.1|  406|Homo sapiens RNA binding motif, single
           stranded interacting protein 1 protein.
          Length = 406

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 316 PPFVYHPAAVYLPSMTHLFLSIMALRPSNMLTALA 212
           P  + HP AV  PSM H     M+L+P++M++ LA
Sbjct: 311 PYILQHPGAVLTPSMEH----TMSLQPASMISPLA 341


>BC012993-1|AAH12993.1|  403|Homo sapiens RNA binding motif, single
           stranded interacting protein 1 protein.
          Length = 403

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 316 PPFVYHPAAVYLPSMTHLFLSIMALRPSNMLTALA 212
           P  + HP AV  PSM H     M+L+P++M++ LA
Sbjct: 308 PYILQHPGAVLTPSMEH----TMSLQPASMISPLA 338


>BC012992-1|AAH12992.1|  403|Homo sapiens RNA binding motif, single
           stranded interacting protein 1 protein.
          Length = 403

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 316 PPFVYHPAAVYLPSMTHLFLSIMALRPSNMLTALA 212
           P  + HP AV  PSM H     M+L+P++M++ LA
Sbjct: 308 PYILQHPGAVLTPSMEH----TMSLQPASMISPLA 338


>AK128353-1|BAC87395.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46495 fis, clone THYMU3028461. ).
          Length = 189

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 343 LYLPANYSTLCRREMCFYALFSEFL**NNGNSF-VLYQNGRFIQNNIC 483
           +Y P ++  LC    CF+ + +  L   N   F VL+    F++  IC
Sbjct: 80  VYFPTHFPALCPHHSCFHQITNNLLVAENQRMFLVLHLTTPFLKKRIC 127


>AC092153-3|AAX93095.1|  205|Homo sapiens unknown protein.
          Length = 205

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 316 PPFVYHPAAVYLPSMTHLFLSIMALRPSNMLTALA 212
           P  + HP AV  PSM H     M+L+P++M++ LA
Sbjct: 110 PYILQHPGAVLTPSMEH----TMSLQPASMISPLA 140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,503,514
Number of Sequences: 237096
Number of extensions: 1291328
Number of successful extensions: 5454
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5454
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)