Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N22
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.2  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   8.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/29 (24%), Positives = 20/29 (68%)
 Frame = +3

Query: 369 IMSKRNVFLCIVL*ISLVKQWQLLCFISK 455
           +++ +N+F  + + I+++   Q++CF+ K
Sbjct: 1   MLNMKNIFPVLFVIINVLLHGQVICFVCK 29


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -1

Query: 448 IKQRSCHCFTKEIQRTMHKNTFLFDIMYYNLQVS 347
           I++ + H + KE+Q  + +   LFD ++   +++
Sbjct: 148 IREVARHFYHKELQIELVREEILFDTVHVTFKLT 181


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 400 MHKNTFLFDIMYYNLQVSTNDS 335
           +HK   +FD++ Y  Q   +D+
Sbjct: 33  LHKQKKIFDLLLYVRQADLSDA 54


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 400 MHKNTFLFDIMYYNLQVSTNDS 335
           +HK   +FD++ Y  Q   +D+
Sbjct: 33  LHKQKKIFDLLLYVRQADLSDA 54


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 13  NYSNCNKYSKRSSSY 57
           NYSN N Y+   ++Y
Sbjct: 90  NYSNYNNYNNNYNNY 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,304
Number of Sequences: 438
Number of extensions: 3065
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)