Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N20
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   3.5  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    26   6.2  
SPAC167.04 |pam17||presequence translocase-associated motor subu...    25   8.2  

>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 399 NNLKYILTYVTNCI 358
           NNLKY L+YVTN +
Sbjct: 113 NNLKYALSYVTNAL 126


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 176 VPSNGNESVSESGCGIEIQTLESGIGYACG 265
           + ++ NES+ E    I  + +E G+  ACG
Sbjct: 401 IHADKNESIPEIESKIHAEAVEEGVNLACG 430


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 422 KYCHTVKTFLLECWPQKSLFNSNFELFMKIK 514
           K C+ VKT+  E   QK   + N+  F+K++
Sbjct: 25  KTCYNVKTYSTESIKQKKPQDLNWPTFLKLR 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,247
Number of Sequences: 5004
Number of extensions: 45902
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)