Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N19
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    38   0.001
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    38   0.003
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    29   1.2  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    28   1.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.7  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    27   4.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.2  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = -2

Query: 874 LPDRGTSAXFKGAFSNVLRGTGGAFVLVLYDEIKKVL 764
           L   G  + FKGA +N+LRG  GA VL +YD+++ ++
Sbjct: 281 LAKEGARSFFKGAGANILRGVAGAGVLSIYDQVQLLM 317


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +1

Query: 7   VLVLYEFFRKNSNTXSLRXTNXFTYMXSLLAATQRFSID*KQ*CQLLGSAHQFNKSQMSA 186
           ++ LY FF    +T  ++       M  L   TQ+      Q  QL G AH+FN+   + 
Sbjct: 46  LIYLYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNEDAKTD 105

Query: 187 LHNQLQNHMILHLIA 231
           L N ++ H  L  +A
Sbjct: 106 LRNSIKQHQQLKELA 120


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 386 NCSELHIKRSV*CLLSILNLSFVGIENFHFFLHSGS 279
           NC+ +H+KR+    L  +N SF+  E  ++    GS
Sbjct: 308 NCTRVHLKRTSPSELDYINASFIKTETSNYIACQGS 343


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 128 NNNVNY*VPHTNLTSHKCQRYIISFKIT*FYI**HNVYRSQKYTT*LCQTHS 283
           NN+ NY V       H+C++++ + K   +Y+    +++ +KY T   Q  S
Sbjct: 504 NNDENYLVNQREDLIHQCKKFLHTLKTARYYLETVQLHQLKKYVTYFSQIWS 555


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 532 QLLSYYIIYS*FKMKND*FFLCDIT*FGLRLLCN*PHFSLLPEAKAELKIVQNFILKE 359
           QLL YY IY  FK+  D   L +     ++ + +  HF LL +    L+I  N+  +E
Sbjct: 550 QLLEYYDIYLKFKLLADWRLLTNPV-LQIQEISDYCHFKLLKKVNRNLQIKTNYPTQE 606


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 199 LQNHMILHLIA*CVQKSKIHYIIMSNSL--PLCKKKWKFSIPTKLKFKIDNRH 351
           + + + L+ I+   +   +H +++   +  P  K+ W+F+    L F ++N H
Sbjct: 20  IDSPIFLNKISALPESENVHCLLLKQLIGSPQLKQTWQFNFCVDLNFLLENMH 72


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 789  KTSTKAPPVPLRTLEKAPL 845
            K S+KAPPVPL + +  P+
Sbjct: 1016 KLSSKAPPVPLPSADAPPI 1034


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,244,045
Number of Sequences: 5004
Number of extensions: 63061
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)