Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N19
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019...    43   4e-04
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887     34   0.17 
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309     33   0.23 
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    31   1.6  
10_08_0185 + 15578607-15578845,15580422-15580536,15580656-155807...    29   3.8  
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739...    29   6.6  

>05_06_0233 +
           26599068-26599466,26601214-26601829,26601871-26601917,
           26602101-26602268
          Length = 409

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = -2

Query: 862 GTSAXFKGAFSNVLRGTGGAFVLVLYDEIKKVL 764
           G  + ++GA SN+ R TG A +LVLYDE+KK +
Sbjct: 304 GIKSFYRGALSNMFRSTGAAAILVLYDEVKKFM 336


>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
          Length = 380

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -2

Query: 862 GTSAXFKGAFSNVLRGTGGAFVLVLYDEIKKVL 764
           G  + FKGA +N+LR   GA VL  YD+++ V+
Sbjct: 338 GAKSLFKGAGANILRAVAGAGVLAGYDKLQVVV 370


>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
          Length = 382

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -2

Query: 874 LPDRGTSAXFKGAFSNVLRGTGGAFVLVLYDEIK 773
           L + G  + FKGA +N+LR   GA VL  YD+++
Sbjct: 336 LKNEGAKSLFKGAGANILRAIAGAGVLSGYDQLQ 369


>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 184 ALHNQLQNHMILHLIA*CVQKSKIHYIIMSNSLPLCKKK 300
           A HN L NH++ H     +  +K H+    ++LP  K K
Sbjct: 87  AFHNLLDNHLLHHFHTLLIHANKPHFDAFLSNLPFAKLK 125


>10_08_0185 +
           15578607-15578845,15580422-15580536,15580656-15580745,
           15581935-15582033,15582154-15582258
          Length = 215

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +3

Query: 771 FLISSYKT-STKAPPVPLRTLEKAPLXKAEV--PRSGNG 878
           FL+S+Y+  +   PP+PL +L+ +PL   ++  PR G G
Sbjct: 16  FLLSAYQEYALLLPPLPLPSLKNSPLANPDLRAPRRGGG 54


>07_03_1567 -
           27772815-27773302,27773471-27773561,27773641-27773988,
           27774929-27775110,27775191-27775368,27775453-27775605,
           27775993-27776232,27776369-27776449,27776485-27776730,
           27777151-27777240,27777536-27777778,27778365-27778529,
           27779017-27779080,27779162-27779286,27779383-27779476,
           27779647-27779714,27779798-27779989,27780618-27780752,
           27780847-27780934,27781014-27781107,27781484-27781547,
           27781657-27781708,27781911-27782014,27782099-27782158,
           27782687-27782770,27782892-27783125,27783442-27783864,
           27784675-27784736,27784867-27785521
          Length = 1700

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
 Frame = +1

Query: 163 FNKSQMSALHNQLQNHMILHLIA*CVQKS---KIHYIIMSNSLPLCKKKWKF 309
           FN+++++ LH +L+ H++  +I   V+KS   KI  I+  +  PL K+ +K+
Sbjct: 799 FNETELANLHKELRPHILRRVIK-DVEKSLPPKIERILRVDMSPLQKQYYKW 849


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,432,656
Number of Sequences: 37544
Number of extensions: 349364
Number of successful extensions: 502
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)