Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N17
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    30   0.39 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   2.7  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.7  
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    27   3.6  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   3.6  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   6.3  
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    26   6.3  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   6.3  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   8.3  

>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 244 GYYCTICNIILPNPVVDQHLKSDTH 170
           G+ C +C I +PN     H KS TH
Sbjct: 70  GFACEVCQIYIPNSKKINHFKSMTH 94


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 205 PVVDQHLKSDTHTSELGRAVASVNAYKVV*DVKYRFNGSVINMNSSKLL 59
           P    H+ S  H      +++++N Y    D+K R    + +M   KLL
Sbjct: 163 PTASAHISSSDHEKSSSVSLSALNNYNKTTDIKARSLDRLSDMTRPKLL 211


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 235 CTICNIILPNPVVDQHLKSDTHTSEL 158
           C  C   LP+PVV +H KS + T+ L
Sbjct: 203 CPTCRFGLPSPVVLEHAKSHSITTFL 228


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = -3

Query: 391 KCVFCNREMDLDHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRGNGYYCTICNI 218
           +C+ C+R +  D A K ++ +      A+        Y E  I  +     YC  C I
Sbjct: 22  RCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAI 79


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 241 YYCTICNIILPNPVVDQ-HLKSDTHTSELGRAVASV 137
           + CT C +   N    + H KSD H   L R VAS+
Sbjct: 5   FACTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASL 40


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 313 KAMTSNPNLEDYGENLIRNLRGNGYYCTICNIILPNPVV 197
           K MTS   LE   E L+   + +  +C  C+I  PN ++
Sbjct: 18  KNMTSENGLEHQFEELLVEKQYSEEHCAYCHIKNPNSIL 56


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/58 (25%), Positives = 22/58 (37%)
 Frame = -3

Query: 391 KCVFCNREMDLDHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRGNGYYCTICNI 218
           +C+ C+R +  D A K +  +      A+        Y E  I  L     YC  C I
Sbjct: 22  RCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAI 79


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 346 KEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRGNGYYCTICNIILPN 206
           KE  KKT   L A T +  + +YGE +  ++  N +   + + ++ N
Sbjct: 608 KEDMKKTCASLSAFTKDVYIPNYGEIINVSIDVNAFSLKLADDLIKN 654


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -3

Query: 358 DHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIR 260
           D   K   K T GH       PNLE    N I+
Sbjct: 423 DEVVKFIEKNTQGHSLESKKEPNLESQSSNKIK 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,197
Number of Sequences: 5004
Number of extensions: 65108
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)