Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N15
         (623 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    31   1.7  
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    31   1.7  

>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
           Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 462 NSEHMNKTVLSQTVLLFI*TFRTIVINVYTSFINCLVI 349
           NSEH NKTVLSQ    F   F++ + N+ + +I+   +
Sbjct: 255 NSEHRNKTVLSQLKKNFPELFKSQLENICSEYIDIFAL 292


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 462 NSEHMNKTVLSQTVLLFI*TFRTIVINVYTSFINCLVI 349
           NSEH NKTVLSQ    F   F++ + N+ + +I+   +
Sbjct: 18  NSEHRNKTVLSQLKKNFPELFKSQLENICSEYIDIFAL 55


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,532,982
Number of Sequences: 53049
Number of extensions: 331145
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)