Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N15
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-12|CAA91397.3|  614|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    27   8.2  
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z66521-12|CAA91397.3|  614|Caenorhabditis elegans Hypothetical
           protein W02B12.4 protein.
          Length = 614

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 456 EHMNKTVLSQTVLLFI*TFRTIVINVYTSFINCLVINKNLFF 331
           ++M K   +Q VL+ + T  ++  + +  F+NC +  KN+ F
Sbjct: 322 DNMVKNTQNQKVLMGVMTLESLYFSEFRFFVNCQIYKKNVGF 363


>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 27  LLQINSTYKPFYIHFITFISIFNYVIE 107
           +LQI +  +P   HF TFI +  Y +E
Sbjct: 742 MLQIYNLSRPQPFHFTTFIQMIRYTVE 768


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 27  LLQINSTYKPFYIHFITFISIFNYVIE 107
           +LQI +  +P   HF TFI +  Y +E
Sbjct: 742 MLQIYNLSRPQPFHFTTFIQMIRYTVE 768


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 39  NSTYKPFYIHFITFISIFNYVIEN 110
           NS  KPF +HFI+++ + + +I N
Sbjct: 255 NSRDKPFTLHFISYLPMLSVIIIN 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,333,073
Number of Sequences: 27780
Number of extensions: 200482
Number of successful extensions: 427
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)