Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N15
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   7.4  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   9.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.8  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 259 DNNKYHNQ*YNIFTQFSQNITRYTK 333
           +NN Y+N  YN +   + N   Y K
Sbjct: 92  NNNNYNNNNYNNYNYNNNNYNNYKK 116


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 259 DNNKYHNQ*YNIFTQFSQNI 318
           +NN Y+N  YN + +   NI
Sbjct: 92  NNNNYNNNNYNNYKKLYYNI 111


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 455 NT*IKLC*VRQCYFSYKLL 399
           N  IK+  + +C+F YK +
Sbjct: 111 NALIKISKILECFFKYKTI 129


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 81  ISIFNYVIENNNF*DYLSVNDRNCKIIDFTN 173
           +S +  + +++NF    SVND N  I + T+
Sbjct: 119 LSCWLQMTKHHNFIKVCSVNDVNMTITELTD 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,467
Number of Sequences: 438
Number of extensions: 2899
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)