Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N14
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    32   0.063
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   4.2  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   5.5  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 235 ICFFFLYLPIK*NVRLHNKYFIYIKDE*YNSNKYFLN 125
           IC +FLY  +      ++KY  +++D  YN ++Y LN
Sbjct: 302 ICDYFLYRKLSLKNLDYSKYITFVQDRNYNDSRYSLN 338


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -2

Query: 133 FLNPVRANNYPFGK---YFALFSFYNFKYNEI 47
           F++P  +N  PF     YF+LFSF++F +  +
Sbjct: 96  FIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSL 127


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -2

Query: 634 SFDGQYYLFVI*RLLRRTVIIT*LVLMLNSH 542
           SFDGQ+ L++  +L+  T+++     ++NSH
Sbjct: 281 SFDGQFSLYIAHQLILETIVVE----VMNSH 307


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 108 LFALTGFKKYLFELYYSSLM*IKYLLWSLTFYLIGKYK-KKKQICIVY 248
           +  L G+ +  + ++Y+S+  I   ++   FYL+ K K +KK++  ++
Sbjct: 176 ILILLGYFQCSYSVFYASVFYILLGVFIRVFYLVNKEKFEKKELAFLF 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,808
Number of Sequences: 5004
Number of extensions: 51323
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)