Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N14
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    32   0.41 
Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 24/112 (21%), Positives = 53/112 (47%)
 Frame = +3

Query: 111 FALTGFKKYLFELYYSSLM*IKYLLWSLTFYLIGKYKKKKQICIVYLMFNT*RNVLQNNV 290
           +A+ GF  +   L +     +   L +  ++L+       Q+ +V   F T   V+Q + 
Sbjct: 19  YAIFGFT-FQLTLIFLIFQKLPVFLSNFKYFLVNN--AFSQLALVVFAF-THSAVVQGSG 74

Query: 291 VDVVSSFKLRTLSTLHKFGNTCMKT*DSIMLLLKYIWRNKNLLKYIFSTFYY 446
           + ++ +   R +   H  GN   K   +++++L YI+   NL++++F   Y+
Sbjct: 75  MAILVTIVFRFI---HLIGNRISKKQSTLLIILSYIFPVYNLVRFLFKASYF 123


>Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical
           protein R04B5.9 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 393 YIWRNKNLLKYI-FSTFYY*YHNKNRTITRK 482
           Y+ R  NLL+ I  +TF+Y  HN+  +I RK
Sbjct: 201 YLERTNNLLRGITINTFFYFSHNRLTSIFRK 231


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.2 protein.
          Length = 1594

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 145 SNKYFLNPVRANNYPFGKYFALFSFYNFKYNEICQHPCF*MQRLH 11
           S +Y+ NP     +PF     L +F NF+    CQ  C  +Q  H
Sbjct: 459 STRYYYNPTDGQCHPFTFNGFLGNFNNFQNQADCQLFCARLQCPH 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,860,028
Number of Sequences: 27780
Number of extensions: 273473
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)