Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N13
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468...    31   1.3  
12_01_0399 + 3152219-3152721,3152995-3153127,3155013-3155097,315...    28   7.0  
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90...    28   7.0  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   7.0  
04_04_1290 + 32399905-32399972,32400502-32400571,32400950-324017...    28   9.3  
03_02_0816 + 11487811-11488708,11488835-11489235                       28   9.3  

>04_04_0369 -
           24745140-24745510,24746005-24746089,24746746-24746878,
           24747764-24748584
          Length = 469

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = -2

Query: 675 VDDRRSRKKEQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQREIRYLKA 496
           VD +R+++   N+ +A R ++             QTL+   T L  + S LQR+   L +
Sbjct: 267 VDPKRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTS 326

Query: 495 LMRDLFKAKGLIK*INQQRRLQ 430
              DL   K  ++ + QQ RLQ
Sbjct: 327 ENSDL---KIRVQTMEQQVRLQ 345


>12_01_0399 +
           3152219-3152721,3152995-3153127,3155013-3155097,
           3155321-3155586
          Length = 328

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -2

Query: 675 VDDRRSRKKEQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQREIRYLKA 496
           +D +R+++   N+ +A R ++             QTL+   T L  + + LQR+   L A
Sbjct: 161 IDPKRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLTA 220

Query: 495 LMRDL 481
             R+L
Sbjct: 221 ENREL 225


>12_01_0119 +
           905916-907277,907737-907774,908269-908492,909411-909637,
           909733-909980,910275-910557,910707-911135
          Length = 936

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 300 LSEQIRCHIIEQHKLRHHQRDTNNTL 223
           L EQ+R  I++  K +HH +D++N+L
Sbjct: 714 LDEQVRLLILDVAKEQHHYQDSHNSL 739


>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 300  LSEQIRCHIIEQHKLRHHQRDTNNTL 223
            L EQ+R  I++  K +HH +D++N+L
Sbjct: 1256 LDEQVRLLILDVAKEQHHYQDSHNSL 1281


>04_04_1290 +
           32399905-32399972,32400502-32400571,32400950-32401734,
           32403068-32403674
          Length = 509

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 567 LRQRHTELGEKCSDLQREIRYL---KALMRDLFKAKGL 463
           +RQR  EL E+CS ++ EI  +   K  +  LF+  GL
Sbjct: 440 IRQRVVELEEECSSMREEIHRIGKPKGALSRLFRKLGL 477


>03_02_0816 + 11487811-11488708,11488835-11489235
          Length = 432

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 526 PPKRDSLPKGSDA*SFQGEGSNQVNQSTTPPPEK 425
           PP  ++  KGSD   ++ +GS  V+ S +P P+K
Sbjct: 206 PPTPEATGKGSDN-RWKDDGSRDVDPSPSPTPQK 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,241,883
Number of Sequences: 37544
Number of extensions: 264726
Number of successful extensions: 521
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)