Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N13
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   4.1  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   5.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 154 IRYCKNMYTYRINNS*RLVLVKARFXGERDRL 59
           + +C+ MY  ++NN+   +L       ER  L
Sbjct: 460 LHFCRQMYAMKVNNAEYALLTAIVIFSERPNL 491


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 116 QQLTPCFGESTIXGRERQTWIEKF 45
           ++L   +G+  +  R+ Q W +KF
Sbjct: 27  KKLCAVYGDEALKERQCQNWFDKF 50


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 455 KSINNAASREIKQYAKTHKAIDSVDHRKLRE 363
           KS +   SRE K+  + +  + +V+ + LRE
Sbjct: 2   KSCSRDRSREYKKKDRRYDQLHNVEEKHLRE 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,542
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)