Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_N06
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 110 9e-25
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 106 2e-23
03_06_0191 - 32228642-32228949,32229028-32230567 31 0.87
01_03_0196 - 13696056-13697448,13697676-13697713 30 1.5
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 30 2.0
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 29 2.7
01_03_0224 + 13940419-13941786 29 2.7
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 29 3.5
09_06_0182 - 21397221-21397575,21397712-21398076,21398510-213986... 28 6.2
09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929... 28 6.2
04_04_0387 + 24869594-24871480 28 8.1
03_02_0183 - 6225827-6226414,6226478-6226512,6227244-6227331,622... 28 8.1
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 110 bits (265), Expect = 9e-25
Identities = 74/219 (33%), Positives = 112/219 (51%)
Frame = -3
Query: 694 QPLKSLVDYLXPDANKSAIVADIDARVAKGTELSNEIXLIVAATIYYHEDNYEAALKILH 515
Q +K L YL D +SAIV+ + ++ SN + ++A I+ HE +Y ALK H
Sbjct: 69 QAVKLLALYLSGD-KESAIVS-LKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTH 126
Query: 514 NAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDA 335
+ +L+L A +Q + M+R D A KQLK++Q I++D TLTQLA AWL++ GG I++A
Sbjct: 127 SGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKIREA 186
Query: 334 HYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAASRAPQXXXXXXXXXXXX 155
+ + +E G ++EAE L +A ++ +
Sbjct: 187 YLIFQDFAE-KYPMTGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLANLIVCN 245
Query: 154 XXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 38
GKP S+RYL+QL SHP H VK + D F+R
Sbjct: 246 LHLGKP---SSRYLSQLKLSHPDHVLVKRAVSAEDNFER 281
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 106 bits (254), Expect = 2e-23
Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 1/220 (0%)
Frame = -3
Query: 694 QPLKSLVDYLXPDAN-KSAIVADIDARVAKGTELSNEIXLIVAATIYYHEDNYEAALKIL 518
Q ++ L YL A K + + ++ +A SN I +VA T+ HE +Y ALK
Sbjct: 76 QAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHT 135
Query: 517 HNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQD 338
++ ++EL A +Q L M+R D A KQL+++Q +++D TLTQLA AW++L+ GG IQ+
Sbjct: 136 NSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQE 195
Query: 337 AHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAASRAPQXXXXXXXXXXX 158
AH +LSE +E+AE L ++ ++ +
Sbjct: 196 AHLIFQDLSEKYPATCLILNGKALCLMHMGN-FEDAEGLLLESLNKDAKDAETLANLVVC 254
Query: 157 XXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 38
GK ++RYL QL +HP H VK + D F R
Sbjct: 255 SLNLGKS---ASRYLNQLKLAHPDHMLVKRMSSAEDSFDR 291
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Frame = -3
Query: 682 SLVDYLXPDANKSAIVADIDARVAKGTELSNEIXLIVAATIYYHEDNYEAALKILH---- 515
S+++ L + V V + TE+++ + L V + N++ AL +L
Sbjct: 470 SVINMLCQEKKYEQAVEIFTKCVVQDTEVASSV-LTVFILALCKQGNFKGALSVLSCIPS 528
Query: 514 NAESLELRAFTLQCLLAMNRPDLARKQLKLLQ 419
N ES+ L+CL+ + DLA + +K ++
Sbjct: 529 NVESVNSHVILLKCLIDVGEVDLAIEHIKSIR 560
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -3
Query: 556 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 428
YH + ++++K LH+ + L + A + C+++ P L ++ K
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 86 LGVAVEQLGQVSGRHLRWFPEMRRGERK--AEQQVGVLWGAGRCVCQLLFSLFPHTSGSC 259
+ + +G V W P M+ K + +V + G+ + ++ F+ F GSC
Sbjct: 657 ISMVKRSIGSVCADVSEWQPSMKNWHTKDYEKAKVHLQCDNGQKITEIKFASFGTPQGSC 716
Query: 260 SPSTEGG 280
TEGG
Sbjct: 717 GSYTEGG 723
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 142 KPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQP 17
+P EV +L+ DS P+HP +K++ + + + A+ QP
Sbjct: 19 EPEEVE--WLSSSSDSEPEHPALKQWTPSSPDSEEAEAEQQP 58
>01_03_0224 + 13940419-13941786
Length = 455
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 484 TLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 350
T +CL+ RP LAR L ++ D+ G ++ W + + GGP
Sbjct: 368 TAECLVLRRRPRLARTNLFVVTDVRRVG-FDRVDFGWGDPVYGGP 411
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 110 GQVSGRHLRWFPEMRRGERKAEQQVGVLWGAGRCVCQLLFSLFPHTSGSCSPST 271
G R W PE R ER+ ++ G W R + Q + +L S CSPST
Sbjct: 100 GMAGTREGSWTPERRGEERRRRREEG-SWFLARSL-QSVGTLHVGFSSRCSPST 151
>09_06_0182 -
21397221-21397575,21397712-21398076,21398510-21398685,
21398802-21399039,21399627-21400118
Length = 541
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 133 EVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPDKXR 5
E+ +++LA L + P VKE + DE+ + +Y P + R
Sbjct: 450 ELLSKWLAHFLHGSFRLPSVKEMEEDIDEWDKYMKRYSPGRFR 492
>09_06_0140 +
21090686-21091645,21092142-21092221,21092705-21092906,
21093052-21093327,21093414-21093482,21093638-21093785,
21094080-21094228,21094897-21095061,21095623-21095732,
21095868-21095946,21095947-21096240
Length = 843
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 186 PTCCSALRSPRRISGNHRR 130
PT C+ R PR G+HRR
Sbjct: 55 PTSCATARQPRHARGHHRR 73
>04_04_0387 + 24869594-24871480
Length = 628
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -3
Query: 121 RYLAQLLDSHPQ---HPFVKEYKAKTDEFQ 41
R L LL +HP HP+ KE+K K +E +
Sbjct: 403 RCLEFLLTNHPMELLHPYTKEWKVKLEEME 432
>03_02_0183 -
6225827-6226414,6226478-6226512,6227244-6227331,
6228892-6228900
Length = 239
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 177 CSALRSPRRISGNHRRCRP 121
C L SPR + HRR RP
Sbjct: 101 CCILHSPRHVGARHRRLRP 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,647,262
Number of Sequences: 37544
Number of extensions: 378163
Number of successful extensions: 1164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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