Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N05
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   1.3  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    25   5.1  

>SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 86

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 448 LPNMWKKMRLMFKPPFYFIPFHENTSFVMIS 356
           +P +W+K +   KPPF   P HE +  ++IS
Sbjct: 32  IPVVWQKTK---KPPFVSFPRHEPSETIVIS 59


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 146 FIKTLQKICN*IC*NT*KCNNCSLQKWSYNIKM 244
           F K +QK+   I   T KC+   L++W +N++M
Sbjct: 76  FAKKIQKLILVI---TSKCSGEDLERWQFNVEM 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,344
Number of Sequences: 5004
Number of extensions: 36736
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)