Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N04
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    32   0.081
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.76 
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    28   1.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.3  

>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 31.9 bits (69), Expect = 0.081
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 367 PED*FEKP*EIKITNSALSNKVFFIEQFYSTL*SPSTIEGSETLPVKSNCFVYSSCM 537
           PE     P  IK+ N+AL     F  QF ST  SP+T       P+     V  +C+
Sbjct: 44  PEKPLNWPVSIKLLNTALYGLTTFAAQFNSTTMSPTTSHLVNAYPIGHEVAVLPTCL 100


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 388 P*EIKITNSALSNKVFFIEQFYSTL*SPSTIEGSETLPV 504
           P +  ITN  +     F E+F ST  SPS   GS   PV
Sbjct: 344 PYDFPITNDKMYPSPSFQEEFPSTSKSPSATPGSSNAPV 382


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 227 VETLYYYYWKLRGFCLSTIN-IQQA--ALVLVNFVFEAIVFLSLFQCL 361
           ++TL+   W +    LS  N +Q+   AL +   +F+A+ F + FQCL
Sbjct: 50  LDTLFILSWVVASIPLSVYNQVQELNIALKVQPELFQALAFTTFFQCL 97


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 332  IVFLSLFQCLSCLKTDSKSHKKLKLQILH*VTKYFLLNNSIVLYNLHRLSKD 487
            + F + F+C+S LK+DS   ++    ++    K   L + +VL+   R+  D
Sbjct: 1696 LYFYTAFECMSSLKSDSHDTEEYN-DLMDVFQKKIYLASQLVLHGFQRVIGD 1746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,162
Number of Sequences: 5004
Number of extensions: 47083
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)