Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_N04
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0044 - 25150322-25151260 38 0.007
11_01_0767 + 6438648-6438809,6439146-6440000 33 0.26
11_02_0012 - 7346282-7347136,7347234-7347593 31 0.59
01_06_0824 - 32243495-32244319,32244449-32244859 31 0.78
11_02_0011 - 7337618-7338496,7338596-7338991 31 1.0
11_01_0771 + 6453130-6454488 31 1.0
12_01_0824 + 7601811-7602598,7603690-7605730,7605762-7605767,760... 29 2.4
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 29 2.4
04_04_0620 + 26656072-26656417,26656585-26657396 29 3.2
11_01_0750 - 6315126-6315896,6316371-6316784 29 4.2
04_04_0619 + 26652923-26653267,26653440-26654273 29 4.2
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818... 29 4.2
>05_06_0044 - 25150322-25151260
Length = 312
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = -2
Query: 641 GSIAHSATEIGIVXKFGEDDENDYEVVVNKPFLFFIQDEYTKQLLFTGRVSDP 483
G++A + T +G + F D+ + V + PFLFFI +E + ++F G+V +P
Sbjct: 258 GTVAAAGT-VGEIMGFAMPDDQIVDFVADHPFLFFIVEEVSGLVVFAGQVVNP 309
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 569 EVVVNKPFLFFIQDEYTKQLLFTGRVSDPS 480
+ V + PF FFI +E ++ ++F G V DPS
Sbjct: 306 DFVADHPFAFFIVEERSQAIVFAGHVLDPS 335
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 569 EVVVNKPFLFFIQDEYTKQLLFTGRVSDPSIVD 471
+ V + PF FF+ +E + +LF G V DP+ ++
Sbjct: 372 DFVADHPFAFFVVEEKSDAVLFAGHVLDPTSLE 404
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = -2
Query: 569 EVVVNKPFLFFIQDEYTKQLLFTGRVSDPS 480
+ V + PF+F I+++ T ++F G+V++PS
Sbjct: 379 DFVADHPFMFLIKEDLTGVVVFAGQVTNPS 408
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 569 EVVVNKPFLFFIQDEYTKQLLFTGRVSDPS 480
+ V + PF FF+ +E + +LF G V DP+
Sbjct: 391 DFVADHPFAFFVVEETSGAVLFAGHVLDPT 420
>11_01_0771 + 6453130-6454488
Length = 452
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 569 EVVVNKPFLFFIQDEYTKQLLFTGRVSDPSI 477
+ V PF +FI +E + ++F G + DPS+
Sbjct: 421 DFVAEHPFAYFIVEEMSSAVVFAGHIVDPSM 451
>12_01_0824 +
7601811-7602598,7603690-7605730,7605762-7605767,
7606142-7606291
Length = 994
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 583 TKTTMKWWLTSRSCSSYKTSTRNNCFLREESP 488
TK+T W+T+ SCS K ++R SP
Sbjct: 711 TKSTTPGWMTALSCSIEKLGNLKGLYVRSNSP 742
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 569 EVVVNKPFLFFIQDEYTKQLLFTGRVS 489
+ V + PFLF IQ++ T +LF G V+
Sbjct: 436 DFVADHPFLFLIQEDMTGVVLFVGHVA 462
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 563 VVNKPFLFFIQDEYTKQLLFTGRVSDP 483
V + PF+F I+++ T +LF G V +P
Sbjct: 689 VADHPFMFLIREDVTGVILFIGHVVNP 715
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 563 VVNKPFLFFIQDEYTKQLLFTGRVSDPSIVD 471
V PF+F I + Q+LF G V DPS D
Sbjct: 354 VAEHPFMFAIVEYKKAQVLFLGHVMDPSKED 384
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 551 PFLFFIQDEYTKQLLFTGRVSDPS 480
PF F I++E + ++F G V DPS
Sbjct: 368 PFFFMIREEVSGTVIFMGHVLDPS 391
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 563 VVNKPFLFFIQDEYTKQLLFTGRVSDPS 480
V PF+F I + Q+LF G V DPS
Sbjct: 362 VAEHPFMFAIVEYEKAQVLFLGHVMDPS 389
>03_05_0524 -
25181432-25181483,25181565-25181691,25181776-25181826,
25182159-25182314,25182405-25182905,25182999-25183713,
25183797-25183867,25183974-25184103,25185706-25186167
Length = 754
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 488 DPSIVDGDYKVL*NCSIKNTLLLNAEFVILISYGFSNQSSGS 363
DP + DGD + + S + LL N L++ GF NQ + S
Sbjct: 690 DPDLPDGDNLSVASASTSHDLLYNLRCSKLLTIGFHNQRTQS 731
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,480,752
Number of Sequences: 37544
Number of extensions: 267652
Number of successful extensions: 447
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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