Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_N03
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical ...    27   6.5  
U41273-3|AAA82455.2|  257|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical
           protein F31E8.5 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -3

Query: 186 RYWAA---AIVISSPLFYKIHKMSNSPEN 109
           +YWA      +I   L  K+H +S SPEN
Sbjct: 139 KYWARNRLEFIIDDQLISKVHVLSKSPEN 167


>Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical
           protein F18H3.3b protein.
          Length = 566

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 327 VFSIFSSFTYALTMSDAPGRPMKFPY 250
           +FS F   T A+ M+DA G+P  F +
Sbjct: 257 MFSKFGEITSAVVMTDAQGKPKGFGF 282


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 327 VFSIFSSFTYALTMSDAPGRPMKFPY 250
           +FS F   T A+ M+DA G+P  F +
Sbjct: 257 MFSKFGEITSAVVMTDAQGKPKGFGF 282


>AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical
           protein C24D10.4 protein.
          Length = 233

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 285 SDAPGRPMKFPYTFSAKVAQF 223
           S+ PG P +FP  F A +AQF
Sbjct: 79  SEFPGFPSEFPAGFPADIAQF 99


>U41273-3|AAA82455.2|  257|Caenorhabditis elegans Hypothetical
           protein C26B9.3 protein.
          Length = 257

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 93  QPTCLHFQGSLTFCEFCRRV 152
           Q  C   +GS  FC+FC+++
Sbjct: 117 QCPCAKLEGSCVFCDFCKQL 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,115,120
Number of Sequences: 27780
Number of extensions: 187395
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)