Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M24
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   182   2e-46
AL110490-10|CAB54446.1|  430|Caenorhabditis elegans Hypothetical...    31   0.68 
Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  182 bits (443), Expect = 2e-46
 Identities = 81/154 (52%), Positives = 111/154 (72%), Gaps = 1/154 (0%)
 Frame = -3

Query: 539 KAKGQ-LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 363
           KA G+ L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GE
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 362 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 183
           I+             KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 182 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIXIPI 81
           A  I I+KV+ +KA   +R  +K FH++ I  P+
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPL 157


>AL110490-10|CAB54446.1|  430|Caenorhabditis elegans Hypothetical
           protein Y48B6A.10 protein.
          Length = 430

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 195 TQSPSSLNTDYQSGSNQGCCVSPSTGQTVPQQHHXDSHCPNVCTTTRD 52
           +Q P SL      G  +   ++   G+T  + +H D+HC NV  T  D
Sbjct: 292 SQPPDSLTAQQSIGIMKQFVMTMLIGETSLKLYHNDAHCRNVLLTDTD 339


>Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical
           protein K01C8.1 protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = -3

Query: 227 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIXIPIAQTCAPLQET* 48
           VT  +++ GAR+     + Q  K  VI A+A        +H   + IP+      +    
Sbjct: 143 VTGSFKERGARYALSKMAEQFKKAGVIAASAGNHALALSYHGQQMGIPVTVVMPVIAPLM 202

Query: 47  YLRVSRGLALTSVM 6
            ++  R L  T ++
Sbjct: 203 KIQFCRSLGATVIL 216


>Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical
           protein F26E4.7b protein.
          Length = 608

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 422 WRQLDPERKFSFY--TREAWARSPTGAYGR 505
           W+ L PE+ F+F+  T EAW +  T    R
Sbjct: 451 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 480


>Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical
           protein F26E4.7a protein.
          Length = 677

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 422 WRQLDPERKFSFY--TREAWARSPTGAYGR 505
           W+ L PE+ F+F+  T EAW +  T    R
Sbjct: 520 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 549


>U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B1.4 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 211 EIWELDTEPELTQYRLSKWK*SRLLRVAVHRS-NSSTTAPSRFPLPKRVHHYKR 53
           EI+ + T+ E+T   L+K     ++   V +  N   TAP+  P+P R +H +R
Sbjct: 251 EIYNIGTDFEMTNIELTK-----MIHFTVSKLLNREPTAPTFAPIPDRPYHDRR 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,461,402
Number of Sequences: 27780
Number of extensions: 304107
Number of successful extensions: 874
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)