Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M21
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   2.4  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    26   7.3  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   9.7  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    25   9.7  

>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 270 LFSYIESLSSNSVIFVLLLITSFAFLTIL 356
           LF+Y E+   N+V+F+++ +T +A  +I+
Sbjct: 40  LFTYKEAFVFNTVVFIIVFLTGWAAKSII 68


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 388  FERCQNYRLDRKIVKNAKLVISNKTKITEFDDKLSIYENKIENLEATLKK 239
            +E+ +N  L   I + +K + SN  K+T   +KL+I  N +   +  +KK
Sbjct: 905  YEKQKN--LQASITEVSKQLKSNSKKVTVLRNKLNILNNSLSKWKCLIKK 952


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 4   IYYY*LTKYNQXSASPKSSLLIHLPXKHRCASRXCAFSFFNTCFKTTKNA*LMYIKIS 177
           +++Y L  Y + S  P    L HLP KH+      A    + C  T  N  L+Y   S
Sbjct: 49  LWFYVL--YKRHSQGPGYESLDHLPLKHKVFMALPA--IMDICGSTLMNVGLLYTSAS 102


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 622 SAKTHSRPSKCWSLLPFNIQNLNLIKPKTFFMKSFAKRICLFPHFLPKYKILVKP 458
           SA+T    +KC  ++ F I  ++L      + +   KR  LFP+F P    L +P
Sbjct: 68  SARTFRNLTKCAKVVNFCIL-ISLFNVFLVWSR-LEKRAALFPYFTPAQAFLSQP 120


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 301 FDDKLSIYENKIENLEATLKKVLLAIESQR 212
           FDD + + +  +ENLEA   +V + +   +
Sbjct: 112 FDDAMDLLKKSVENLEAVALQVYIHLREHK 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,393
Number of Sequences: 5004
Number of extensions: 64278
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)