Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M21
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0416 - 3294386-3294513,3294583-3294743,3295058-3295151,329...    31   1.1  
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541...    28   7.7  

>12_01_0416 -
           3294386-3294513,3294583-3294743,3295058-3295151,
           3295271-3295319
          Length = 143

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 418 KDLERSGGCCFERCQNYRLDRKIVKNAKLVISNKTKITEFDDKLSIYEN 272
           +D  R G  CFE  Q    D   V+  KL+++  T +TE DD L    N
Sbjct: 89  EDYYRYGKTCFETGQ----DHMAVETIKLMLATYTLVTELDDNLQYSTN 133


>01_06_0561 +
           30251547-30252173,30252248-30252405,30253250-30254192,
           30254271-30254438,30254546-30254857,30255498-30255557,
           30255905-30255937,30256083-30256271
          Length = 829

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 712 DTQEIRAD-AELVGHISRIKLISYIESVLIGSAKTHSRPSKCWSL 581
           D + IRA    LVGH   +  + Y+++  I SA T     K W L
Sbjct: 671 DLRNIRAPYCTLVGHTKTVSYVKYVDASTIVSAST-DNSLKLWDL 714


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,930,869
Number of Sequences: 37544
Number of extensions: 345570
Number of successful extensions: 749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)