Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M21
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.8  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +1

Query: 160 MYIKISKVSNGIFFSIN----CVAIQWLIILSSELPRD 261
           ++  I+     +F+++N    CV+I +L +L+  LP D
Sbjct: 225 IFFNITLRRKTLFYTVNLIVPCVSISYLSVLAFYLPAD 262


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 583 LLPFNIQNLNLIKPKTFFMKSFAKRICLFPHFL 485
           LL  N   +NL++P TF  K    R+ ++ + +
Sbjct: 621 LLFINNNYINLVRPNTFTDKVNLTRVDMYANMI 653


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 326 NH*LCVFDNFTIQPIVLTALETTPPAPFKVFVIGV 430
           N  + V  NF+  P+ +   +  PPA   V+   V
Sbjct: 504 NDTVIVMMNFSKNPVTVNLTKLHPPADLVVYACNV 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,430
Number of Sequences: 438
Number of extensions: 4500
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)