Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_M20
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p... 34 0.019
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 29 0.94
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 29 0.94
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 29 0.94
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 29 0.94
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 29 0.94
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 29 0.94
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 29 0.94
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 29 0.94
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 29 0.94
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 29 0.94
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 29 0.94
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 29 0.94
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 26 5.0
>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 33
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 605 LILTAATCWLFWLCAYMAQMNPLIGP 528
LILT + C+L W Y+AQ++PL P
Sbjct: 3 LILTFSCCYLLWAITYLAQLHPLEAP 28
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 132 SLFAIERKKKQYTIKNFVEXFETXAXQRMFKD*G 31
SLF E K+QYT+ N +E E +RMF + G
Sbjct: 71 SLFPNEHTKRQYTL-NHLEELEQQFAERMFSENG 103
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 132 SLFAIERKKKQYTIKNFVEXFETXAXQRMFKD*G 31
SLF E K+QYT+ N +E E +RMF + G
Sbjct: 71 SLFPNEHTKRQYTL-NHLEELEQQFAERMFSENG 103
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 132 SLFAIERKKKQYTIKNFVEXFETXAXQRMFKD*G 31
SLF E K+QYT+ N +E E +RMF + G
Sbjct: 71 SLFPNEHTKRQYTL-NHLEELEQQFAERMFSENG 103
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.7 bits (61), Expect = 0.94
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 724 SKWATPLSRSSFSPSFGVWLVLFAPSSHLKDQ 629
S+W P+++ GVW ++ AP SHL+D+
Sbjct: 47 SRWRAPVNKD-----LGVWDLVEAPGSHLRDE 73
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 132 SLFAIERKKKQYTIKNFVEXFETXAXQRMFKD*G 31
SLF E K+QYT+ N +E E +RMF + G
Sbjct: 71 SLFPNEHTKRQYTL-NHLEELEQQFAERMFSENG 103
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 132 SLFAIERKKKQYTIKNFVEXFETXAXQRMFKD*G 31
SLF E K+QYT+ N +E E +RMF + G
Sbjct: 71 SLFPNEHTKRQYTL-NHLEELEQQFAERMFSENG 103
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 132 SLFAIERKKKQYTIKNFVEXFETXAXQRMFKD*G 31
SLF E K+QYT+ N +E E +RMF + G
Sbjct: 71 SLFPNEHTKRQYTL-NHLEELEQQFAERMFSENG 103
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 132 SLFAIERKKKQYTIKNFVEXFETXAXQRMFKD*G 31
SLF E K+QYT+ N +E E +RMF + G
Sbjct: 71 SLFPNEHTKRQYTL-NHLEELEQQFAERMFSENG 103
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 132 SLFAIERKKKQYTIKNFVEXFETXAXQRMFKD*G 31
SLF E K+QYT+ N +E E +RMF + G
Sbjct: 71 SLFPNEHTKRQYTL-NHLEELEQQFAERMFSENG 103
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 132 SLFAIERKKKQYTIKNFVEXFETXAXQRMFKD*G 31
SLF E K+QYT+ N +E E +RMF + G
Sbjct: 71 SLFPNEHTKRQYTL-NHLEELEQQFAERMFSENG 103
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 132 SLFAIERKKKQYTIKNFVEXFETXAXQRMFKD*G 31
SLF E K+QYT+ N +E E +RMF + G
Sbjct: 71 SLFPNEHTKRQYTL-NHLEELEQQFAERMFSENG 103
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 132 SLFAIERKKKQYTIKNFVEXFETXAXQRMFKD*G 31
SLF E K+QYT+ N +E E +RMF + G
Sbjct: 71 SLFPNEHTKRQYTL-NHLEELEQQFAERMFSENG 103
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 686 SILWGVVGIICPIFAPKGPNRGIIQV 609
++LWG++ +I +F P+ P R +IQV
Sbjct: 189 NLLWGIITMIGILFLPESP-RYLIQV 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,727
Number of Sequences: 5004
Number of extensions: 62990
Number of successful extensions: 137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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