Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M19
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 529 LTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKR 401
           L+ ELRL       + G   P E + S  C+V QA     G++
Sbjct: 562 LSGELRLNMSAIQFKLGHPEPPESVCSLPCEVGQAKKYVAGEQ 604


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -2

Query: 568 VCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSW 446
           VCSV  +      LT+ ++   +R  LQ  E +     + W
Sbjct: 134 VCSVNDVNMTITELTDPVKEFWERRALQISEGVEYVGNIRW 174



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 384 FCIWAGIST 358
           FCIW G+ T
Sbjct: 189 FCIWKGVKT 197


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = +1

Query: 604 KTLHLEVY---WCSCVLQPKEYHPLLKYPA 684
           K L ++ Y   W  C+L  + Y+P + + A
Sbjct: 100 KNLEIKNYNIDWDKCILSSESYNPQVDFVA 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,980
Number of Sequences: 438
Number of extensions: 4714
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)