Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_M18
(808 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 26 0.47
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 26 0.47
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 26 0.47
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 2.5
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 2.5
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.3
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 23 3.3
DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450 monoo... 23 4.4
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 22 5.8
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 25.8 bits (54), Expect = 0.47
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 183 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 82
L +PLD ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 25.8 bits (54), Expect = 0.47
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 183 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 82
L +PLD ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 25.8 bits (54), Expect = 0.47
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 183 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 82
L +PLD ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.4 bits (48), Expect = 2.5
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 49 FFLEKLHVNYCTDRFSSMHQMECL-IDLLQRHIVSDKFV*RQLLLQVLIYKLWYTF 213
F LEK +YC + ++ + CL +DLL + S + + +L+ W +F
Sbjct: 209 FTLEKFFTDYCNSK-TNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSF 263
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.4 bits (48), Expect = 2.5
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 49 FFLEKLHVNYCTDRFSSMHQMECL-IDLLQRHIVSDKFV*RQLLLQVLIYKLWYTF 213
F LEK +YC + ++ + CL +DLL + S + + +L+ W +F
Sbjct: 209 FTLEKFFTDYCNSK-TNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSF 263
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 3.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 469 KFIDSKFLSYLKLVRVDVNTNNAIGTC 549
+ D +Y KLVR VNT++ + C
Sbjct: 31 RLYDDLLSNYNKLVRPVVNTSDVLRVC 57
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 3.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 469 KFIDSKFLSYLKLVRVDVNTNNAIGTC 549
+ D +Y KLVR VNT++ + C
Sbjct: 31 RLYDDLLSNYNKLVRPVVNTSDVLRVC 57
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 23.0 bits (47), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 453 YDKPIQQVLVDLTDGGLEYTFECIGN 376
+D+ Q+V+ G LE F C+GN
Sbjct: 140 FDQLGQEVIYTACVGLLERAFRCLGN 165
>DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 548
Score = 22.6 bits (46), Expect = 4.4
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +3
Query: 372 LHFQYIQKCILDHHQSNPPV 431
L +Y+++C+L+ + PPV
Sbjct: 395 LEMKYLERCLLETLRMYPPV 414
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 22.2 bits (45), Expect = 5.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 329 PHPLWQASSAALMVPTFPIHSKVYSR 406
PH WQ S+A L+ F ++V R
Sbjct: 105 PHMAWQLSTAHLLAQLFLKSTEVTPR 130
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,133
Number of Sequences: 438
Number of extensions: 4505
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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