Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M17
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    52   5e-08
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   3.4  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   4.5  
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    25   6.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.9  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   7.9  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 37/120 (30%), Positives = 58/120 (48%)
 Frame = -1

Query: 534 IGNLPFSVSTILIIRWLEMISKHEGPWLFGRTRMTLTFQKEVAERMAARILDKQRCRLSV 355
           + N P+ +S+ L+ + L+   +   P         L FQ+E A R+ AR  D   CRLS 
Sbjct: 120 VSNTPYQISSPLVFKLLQ---QRPAP-----RAAILMFQREFALRLVARPGDPLYCRLSA 171

Query: 354 MCQSWCTVKYNFDIPGTAFLPKPDVDVGVVTLTPLKHPIIKLPFKLAEKVVRQIFSMRQK 175
             Q W  VK+   +    F P P V+  VV + P K+P   L F+  + ++R +F  + K
Sbjct: 172 NVQMWAHVKHIMKVGKNNFRPPPLVESSVVRIEP-KNPPPPLAFEEWDGLLRIVFLRKNK 230


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 276 VGVVTLTPLKHPIIKLPFKLAEKVV 202
           V +V LTPL HP++ +P+  A KVV
Sbjct: 95  VYLVILTPLPHPML-IPYLFAPKVV 118


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 252 LKHPIIKLPFKLAEKVVRQIFSMRQKY 172
           L+HP++K  FK    + R+I +M ++Y
Sbjct: 442 LQHPLVKEQFKRFAHMQREIVAMSEQY 468


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 391 GSHSLCNFFLKSKSHSCSPKQ 453
           GSH   N++  S S SC P+Q
Sbjct: 142 GSHGYFNYYGASSSRSCIPQQ 162


>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 540 HLIGNLPFSVSTILIIRWLEMIS 472
           H I N+P ++   L I+WLE ++
Sbjct: 178 HAICNMPTNIEGELAIKWLEFVN 200


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 442 NKNDSYFSKRSCRENGCPYLR*AKVQVISYVSILVHCKIQ 323
           N  ++   KR C   GC Y   + +Q++S +   V+ +IQ
Sbjct: 801 NIEENAVKKRLCLLMGCDYSSVSILQIVSQIEHFVNQQIQ 840


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = -3

Query: 445 ENKNDSYFSKRSCRENGCPYLR*AKVQVISYVSILVHCKIQF*YTRYCIFAEARCRRRCS 266
           ENK++ +  K+S RENG       K +  S   +LV   I+  Y  +  +     ++ C+
Sbjct: 68  ENKSNFFSEKQSVRENGNSSAGEKKQKWTSEQHLLVQKIIK--YKNHQYYEILDLKKTCT 125

Query: 265 YSNTIKTSNNKIAI 224
               IK S  K+A+
Sbjct: 126 -DTEIKKSYKKLAL 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,502
Number of Sequences: 5004
Number of extensions: 54760
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)