Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_M17
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 31 0.65
01_06_1417 - 37189068-37190321 30 1.5
11_06_0097 + 20062385-20062745,20063374-20063613,20063831-200641... 29 3.5
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 29 3.5
07_03_0536 - 19205515-19205686,19205807-19205931,19206428-192065... 28 4.6
04_01_0072 - 784922-785567,785673-786406 28 4.6
07_01_0700 + 5280650-5281757,5282509-5282519,5282872-5282967 28 6.1
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746... 28 6.1
11_06_0513 + 24466131-24469487 27 8.0
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 31.1 bits (67), Expect = 0.65
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -1
Query: 537 LIGNLPFSVSTILIIRWLEMISKHEGPWLFGRTRMTLTFQKEVAERMA-ARILDKQRCRL 361
++ NLPF+VST ++ L M +F + M L Q E A R A A I + +
Sbjct: 126 VVSNLPFNVSTEVVKLLLPMGD------VF--SVMVLLLQDETALRFADASIQTPEYRPI 177
Query: 360 SVMCQSWCTVKYNFDIPGTAFLPKPDVD 277
+V + +Y F + T F P+P V+
Sbjct: 178 NVFVNFYSEPEYKFKVERTNFFPQPKVN 205
>01_06_1417 - 37189068-37190321
Length = 417
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 537 LIGNLPFSVSTILIIRWLEMISKHEGPWLFG 445
L G+ P ++L + W +IS+H GPW+FG
Sbjct: 335 LQGSSPLDNVSVLELGWT-VISEHFGPWVFG 364
>11_06_0097 +
20062385-20062745,20063374-20063613,20063831-20064102,
20064304-20064315
Length = 294
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 540 HLIGNLPFSVSTILIIRWLEM 478
HLIG++P +ST+ + WL++
Sbjct: 25 HLIGHVPLEISTLTKLAWLDL 45
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = -1
Query: 306 TAFLPKPDVDVGVVTLTPLKHPIIKLPFKLAEKVVRQIFSMRQKYSIRGAQTLFPE 139
T PK +++ + L P PI K P+K+A + ++ ++ +G+Q++F +
Sbjct: 527 TTMPPKREIEFQI-DLAPGTAPIYKKPYKIAANELAEVKKQVEEQLQKGSQSVFQD 581
>07_03_0536 -
19205515-19205686,19205807-19205931,19206428-19206554,
19206653-19206777,19207616-19207708,19207779-19208052,
19208138-19208269,19208391-19208470,19209049-19209117,
19209227-19209343,19209416-19209484,19209839-19209892,
19210012-19210049,19211243-19211354,19211497-19211619,
19211728-19211755,19212048-19212104,19212984-19213028,
19213340-19213361,19213817-19213844,19214338-19214418
Length = 656
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 234 KLPFKLAEKVVRQIFSMRQKYSIRGAQTLFPEEVREEVALKMYNIADID 88
K F EKV + IF +G F +E+ +EVA+K+ ++ + +
Sbjct: 31 KFVFSGVEKVAKLIFDFSNIKKSKGYSRGFDKELHKEVAIKVIDLEEAE 79
>04_01_0072 - 784922-785567,785673-786406
Length = 459
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 411 VAERMAARILDKQRCRLSVMCQSWCTVKYNFDIPGTAFLPKP 286
+ R+A R L RC +C++WCT+ ++ LP+P
Sbjct: 13 IIHRLAPRYLAISRC----VCKTWCTIIEAHNLLHVDLLPRP 50
>07_01_0700 + 5280650-5281757,5282509-5282519,5282872-5282967
Length = 404
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 369 CRLSVMCQSWC--TVKYNFDIPGTAFLPKPDVDVGVVTLTPLKHPIIKLPFKLAEKVVR 199
CRL +C+SW T +F A P P + VGV L ++ L L ++++R
Sbjct: 37 CRLRAVCRSWLAFTTDPHFVAAHAARHPAPLLAVGVQGFPRLCVDLVDLSGNLVKQILR 95
>02_03_0121 +
15468894-15468906,15469008-15469193,15474157-15474650,
15475090-15475521,15475597-15475821,15476065-15476346,
15476432-15476704,15477680-15477805,15481010-15481288,
15481313-15481588,15481670-15482113,15482200-15482397,
15482574-15482732,15482832-15483085,15483164-15483316,
15483395-15483683,15483769-15483807,15483913-15483951
Length = 1386
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 348 QSWCTVKYNFDIPGTAFLPKPD 283
++W +Y ++ GT F+P PD
Sbjct: 833 RNWARARYQKNVDGTIFMPNPD 854
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 497 IKIVDTLNGRLPMR*TGGGGSN 562
++++ T+NG LP + GGG SN
Sbjct: 363 LEMLQTINGELPEKLLGGGSSN 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,743,581
Number of Sequences: 37544
Number of extensions: 350883
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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