Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M17
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...   161   3e-40
Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical pr...    50   1e-06
Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81593-4|CAB04742.1|  334|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical p...    28   5.4  
AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor tyro...    28   5.4  
AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor tyro...    28   5.4  
AJ002903-1|CAA05738.1|   53|Caenorhabditis elegans protein tyros...    28   5.4  

>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score =  161 bits (391), Expect = 3e-40
 Identities = 79/184 (42%), Positives = 115/184 (62%), Gaps = 1/184 (0%)
 Frame = -1

Query: 570 VHWLDPP-PPVHLIGNLPFSVSTILIIRWLEMISKHEGPWLFGRTRMTLTFQKEVAERMA 394
           V W D   P +H+IGNLPF++++ LII++L  +S   G W +GR  +TLTFQ EVA+R+ 
Sbjct: 126 VDWHDSNLPAMHVIGNLPFNIASPLIIKYLRDMSYRRGVWQYGRVPLTLTFQLEVAKRLC 185

Query: 393 ARILDKQRCRLSVMCQSWCTVKYNFDIPGTAFLPKPDVDVGVVTLTPLKHPIIKLPFKLA 214
           + I    R R+S+M Q     K  F I G+ F+P+P VDVGVV   P K P++   F++ 
Sbjct: 186 SPIACDTRSRISIMSQYVAEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVNTSFEVL 245

Query: 213 EKVVRQIFSMRQKYSIRGAQTLFPEEVREEVALKMYNIADIDPVTRPFQITNMEFARLCE 34
           EKV RQ+F  RQKY  +G +TL+PEE+ +E++  +     IDP T   ++   +FA L E
Sbjct: 246 EKVCRQVFHYRQKYVTKGLKTLYPEELEDELSDDLLKKCRIDPTTTSIRLGIEQFADLAE 305

Query: 33  AYND 22
            YN+
Sbjct: 306 GYNE 309


>Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical
           protein E02H1.1 protein.
          Length = 308

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 33/85 (38%), Positives = 43/85 (50%)
 Frame = -1

Query: 429 LTFQKEVAERMAARILDKQRCRLSVMCQSWCTVKYNFDIPGTAFLPKPDVDVGVVTLTPL 250
           L FQKE A+R+ AR  DK   RLSV  Q    V+    +  T F P P VD  VV + P 
Sbjct: 147 LMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDSAVVRIAP- 205

Query: 249 KHPIIKLPFKLAEKVVRQIFSMRQK 175
           K+P   + F   E ++R  F  + K
Sbjct: 206 KNPPPPVNFVEWEGLLRLCFMRKNK 230


>Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical
           protein W04D2.2a protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 88  VNISNVVHF*SYLFSHFFWEQRLSTPYRILLSH*KYLTDNFLSKFKW 228
           +N++ V ++   +F+HF WE     P  I L+  + + + FL K  W
Sbjct: 260 MNVTEVPNW-LIMFAHFTWEFIHGAPVFIYLALNRMIRERFLEKMHW 305


>Z81593-4|CAB04742.1|  334|Caenorhabditis elegans Hypothetical
           protein T20B3.4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 370 VQVISYVSILVHCKIQF*YTRYCIFAE 290
           + VISY+SI VHC     Y  +C+FA+
Sbjct: 22  LHVISYISIPVHC-----YGGFCVFAK 43


>Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 21  YHCMLHIIWQIPYWLSEKAWSQGQYQQ 101
           Y+ MLH  W    W+S++A  QG++ +
Sbjct: 730 YYKMLHRSWMPVRWMSKEAIEQGRFSE 756


>Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 21  YHCMLHIIWQIPYWLSEKAWSQGQYQQ 101
           Y+ MLH  W    W+S++A  QG++ +
Sbjct: 756 YYKMLHRSWMPVRWMSKEAIEQGRFSE 782


>Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 21  YHCMLHIIWQIPYWLSEKAWSQGQYQQ 101
           Y+ MLH  W    W+S++A  QG++ +
Sbjct: 730 YYKMLHRSWMPVRWMSKEAIEQGRFSE 756


>Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 21  YHCMLHIIWQIPYWLSEKAWSQGQYQQ 101
           Y+ MLH  W    W+S++A  QG++ +
Sbjct: 756 YYKMLHRSWMPVRWMSKEAIEQGRFSE 782


>Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical
           protein C01G6.8c protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 21  YHCMLHIIWQIPYWLSEKAWSQGQYQQ 101
           Y+ MLH  W    W+S++A  QG++ +
Sbjct: 597 YYKMLHRSWMPVRWMSKEAIEQGRFSE 623


>AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 902

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 21  YHCMLHIIWQIPYWLSEKAWSQGQYQQ 101
           Y+ MLH  W    W+S++A  QG++ +
Sbjct: 730 YYKMLHRSWMPVRWMSKEAIEQGRFSE 756


>AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 928

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 21  YHCMLHIIWQIPYWLSEKAWSQGQYQQ 101
           Y+ MLH  W    W+S++A  QG++ +
Sbjct: 756 YYKMLHRSWMPVRWMSKEAIEQGRFSE 782


>AJ002903-1|CAA05738.1|   53|Caenorhabditis elegans protein tyrosine
           kinase protein.
          Length = 53

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 21  YHCMLHIIWQIPYWLSEKAWSQGQYQQ 101
           Y+ MLH  W    W+S++A  QG++ +
Sbjct: 25  YYKMLHRSWMPVRWMSKEAIEQGRFSE 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,379,227
Number of Sequences: 27780
Number of extensions: 312832
Number of successful extensions: 768
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)