Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_M15
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0366 + 2793732-2793838,2793944-2794979 31 1.2
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 30 1.5
06_03_1336 - 29424470-29424897,29425243-29429653 30 1.5
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 29 3.5
09_02_0245 - 6198271-6198437,6198496-6198559,6199011-6199259,619... 29 3.5
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629... 29 4.7
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168... 28 6.2
08_01_0331 + 2966362-2966477,2966561-2966924,2966949-2967050,296... 28 8.1
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116... 28 8.1
>11_01_0366 + 2793732-2793838,2793944-2794979
Length = 380
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 381 LTWFGFPAKARTQLIARTLVPYSTYLTEA 295
+ W AK +ART++P+S YLT+A
Sbjct: 42 IPWANLRAKMDPAAVARTVIPHSEYLTQA 70
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = -1
Query: 373 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 194
V++ QG + + + Y+ PGY + + G ++ LV V ++N+
Sbjct: 441 VYLGSQGALDVEGSELPRLVYVSREKRPGYN--HHKKAGAMNSLVRVSAVLTNAPFILNL 498
Query: 193 ECRAWANNIKYERLEAM 143
+C + NN K R EAM
Sbjct: 499 DCDHYVNNSKAVR-EAM 514
>06_03_1336 - 29424470-29424897,29425243-29429653
Length = 1612
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +2
Query: 239 YKRAQVSFLVGVGEVVPREASVR*VLYGTNVLAISWVLALAGNPNHVKVVLIIRRHVPDV 418
+ R SF+ +G+++ S+R +L T A+ +L N H++ + IIR + P++
Sbjct: 670 FGRFHGSFISPLGDLLSNAKSLRVILLSTPSYAVENMLHNFSNLVHLRYLRIIRGYFPEI 729
Query: 419 LL 424
L
Sbjct: 730 RL 731
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -1
Query: 349 NPADRENIGPIQYLP---HRGFPGYYFPYTNQEGYLSPLVAVHLQRPKT 212
N +DR + P YLP H P Y +Q Y+ PL A H P++
Sbjct: 427 NDSDRHPVPPAVYLPPASHPSQPAAYVHQQHQTSYIPPLTA-HPMPPES 474
>09_02_0245 -
6198271-6198437,6198496-6198559,6199011-6199259,
6199796-6199864,6199956-6200006,6200967-6201014,
6201175-6201255,6202793-6202831,6203045-6203128,
6204524-6204728,6205041-6205143,6205224-6205353,
6206059-6206250
Length = 493
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 360 AKARTQLIARTLVPYSTYLTEASRGTTSPTPTRK 259
A AR ++ R P T T A+ G +PTPT+K
Sbjct: 39 AVARAGVLLRQSAPELTAATTATEGEGNPTPTKK 72
>09_04_0518 -
18261420-18261953,18262054-18262626,18262736-18262948,
18263379-18263510,18263591-18263731,18263899-18264120
Length = 604
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -1
Query: 406 MTAYDKNYLNMVWVSCQGENPADRE-NIGP-IQYLPHRGFPGYYFPYTNQEGYLSPLVAV 233
MT+ + + V + + +N D + N+ P + Y+ P Y+ + + G L+ L+ V
Sbjct: 111 MTSKNHQPIVQVLIDGKSQNAVDDDGNVLPTLVYMAREKSPQYHHNF--KAGALNALIRV 168
Query: 232 HLQRPKTGMLINIECRAWANN 170
+ +++N++C ++NN
Sbjct: 169 SALISDSPVILNVDCDMYSNN 189
>01_06_0715 +
31416338-31416500,31416601-31416710,31416808-31416880,
31416988-31417135,31417867-31418133,31418234-31418576,
31418665-31418802,31419389-31419514,31419626-31419838,
31419918-31420164,31420247-31420446,31420538-31420891,
31420984-31421568
Length = 988
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = -1
Query: 373 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 194
V++ G D + + Y+ PGY + + G ++ LV V ++N+
Sbjct: 415 VFLGETGARDFDGNELPRLVYVSREKRPGYQ--HHKKAGAMNALVRVSAVLTNAPYILNL 472
Query: 193 ECRAWANNIKYERLEAM 143
+C + NN K R EAM
Sbjct: 473 DCDHYVNNSKAVR-EAM 488
>08_01_0331 +
2966362-2966477,2966561-2966924,2966949-2967050,
2967127-2967209,2967306-2967422,2968085-2968187,
2968259-2968928,2969239-2969393,2969529-2969580,
2969734-2969825
Length = 617
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +1
Query: 244 EGSGILPG-WCRGSSTPGSL 300
EG+G G WC+G +TPGSL
Sbjct: 531 EGTGKSVGKWCKGVATPGSL 550
>02_05_0030 +
25209067-25209130,25209231-25209400,25210482-25211668,
25211695-25212011,25212669-25213374,25214248-25215448
Length = 1214
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 457 QSCCRTWVSNRRSYLASGRCRVSICGSRNSCPARKV 564
QS + N R +SG CR + G N C ARK+
Sbjct: 782 QSASTELMENLRRRESSGGCRRCLGGGHNHCRARKM 817
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,611,124
Number of Sequences: 37544
Number of extensions: 451877
Number of successful extensions: 1439
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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