Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M12
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    27   2.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.8  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   3.8  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   6.6  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   8.7  

>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 61  RHQFPC-WNIPSGERTKSVLVLAMTALMSIISSGVKRQPLSCPRLCSFGQLSINS 222
           RH+  C W+ P G+       +     +SI     +RQP+ C  LC   ++ ++S
Sbjct: 149 RHKMKCSWSYPPGDE------IYRDKNISIFEVDGQRQPIYCQNLCLLAKMFLHS 197


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 716  PLIETIYLEDPDQGVLQQIKELNCVNKIKLNKFQ 615
            P+  TI   D D+ VL  I     +NK + NK+Q
Sbjct: 1156 PMTGTISPIDADESVLHDIPAYESLNKSESNKYQ 1189


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 476 IQTATHEEETPFNKLEHIEIIQGNLTSSCLKYLMTGS 366
           I  A +E+E  F KL H+ ++         +YL+ G+
Sbjct: 535 IAEAINEQEREFGKLRHLPLVLAAFVEEKNRYLIVGT 571


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 413 QGNLTSSCLKYLMTGSPKLKKLIIG-DEIKLDDNDMARMLRRYKFENLEGIWF 258
           Q    SSC  +L     K   +++  +E+KL   D+ R+      EN+  + F
Sbjct: 437 QRQCLSSCSSHLSLALQKSSDIVVAAEEVKLATEDIGRVTGAVDMENVFSVIF 489


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 530 FTRIAETCRNLESIEFYSIQTATHEEETPFNKLEHIEII 414
           F  +++    L  +E Y      H  ETP+ ++E IE++
Sbjct: 553 FANVSQLEDRLNRLEKYG-HPRMHPGETPYRRIEDIEVV 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,912
Number of Sequences: 5004
Number of extensions: 59592
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)