Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_M12
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1288 + 35466544-35466579,35466691-35467590,35467695-35468231 35 0.079
02_05_1286 - 35456234-35456677,35456862-35457401 33 0.18
09_02_0453 - 9502060-9502773,9502795-9503367 31 0.74
01_06_0627 - 30705604-30706977 31 0.74
02_03_0120 + 15463163-15465250 31 1.3
11_01_0287 - 2137425-2137581,2137981-2138117,2138246-2138515,213... 29 3.9
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 29 5.2
10_06_0140 + 11147019-11147791,11148301-11150524 29 5.2
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167... 29 5.2
03_05_0200 - 21911260-21911322,21911655-21911705,21911756-219118... 29 5.2
01_06_0625 - 30688456-30689880 29 5.2
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 28 6.9
01_01_0870 - 6789903-6792251 28 6.9
12_02_0312 + 17395716-17398112 28 9.1
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573... 28 9.1
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 28 9.1
04_04_0292 + 24181486-24181515,24181729-24182616,24182702-241828... 28 9.1
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109... 28 9.1
>02_05_1288 + 35466544-35466579,35466691-35467590,35467695-35468231
Length = 490
Score = 34.7 bits (76), Expect = 0.079
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -3
Query: 521 IAETCRNLESIEFYSIQTATHEEETPFNKLEHIEIIQGNLTSSCLKYLMTGS-PKLKKLI 345
I TC+ LES+ + QT E +LEH +++ ++ CLK + S PKL++L+
Sbjct: 198 IIATCKRLESLRMFMCQT---EGTVLQLQLEHQRLVELDICHGCLKLVKLNSLPKLERLV 254
>02_05_1286 - 35456234-35456677,35456862-35457401
Length = 327
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -3
Query: 521 IAETCRNLESIEFYSIQTATHEEETPFNKLEHIEIIQGNLTSSCLKYLMTGS-PKLKKLI 345
I TC+ LES+ + QT E ++EH +++ ++ CLK + S PKL++L+
Sbjct: 66 IIATCKRLESLRMFMCQT---EGTVLQLQVEHQRLVELDICHGCLKLVKLNSLPKLERLV 122
>09_02_0453 - 9502060-9502773,9502795-9503367
Length = 428
Score = 31.5 bits (68), Expect = 0.74
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 24 RHCFFCMCHC-PVSPSVSLLEYTERREN*VCIGARYDRSHEHHFV-RSETPT 173
RHCF + C P++ L+ E ++ CIGA R H HH R PT
Sbjct: 138 RHCFPDLVVCEPLTRRYRLIPRLEEMKHHRCIGAFLRRDHYHHVCSRMPVPT 189
>01_06_0627 - 30705604-30706977
Length = 457
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 593 LDKIGHKIVSLMLSGSSGSFNFTRIAETCRNLESIEFYSIQTATHEEETPFNKLEHI 423
LD + V + GS GSF+ ++ E R LES + + P N LEH+
Sbjct: 249 LDAQPARSVVFLCFGSMGSFSAAQLKEIARGLESSGHRFLWVVRSPRQDPANLLEHL 305
>02_03_0120 + 15463163-15465250
Length = 695
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 215 MESCPKLQSLGQLSGWRFTPDEMMLMRAVIASTNTDLVLSPLG 87
M +CP +L L+GW + DE++L+ + + N D L LG
Sbjct: 437 MLNCPHHPNLVPLAGWCRSKDELVLVYEFMPNGNLDSALHTLG 479
>11_01_0287 -
2137425-2137581,2137981-2138117,2138246-2138515,
2138591-2138716,2138790-2138932,2139032-2139117,
2139574-2139752,2139941-2140210,2140282-2140380
Length = 488
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = -3
Query: 674 VLQQIKELNCVNKIKLNKFQCHELHQLLDK-IGHKIVS---LMLSGSSGSFNFTRIAETC 507
V++ + +L V + KF H + L + I K+++ L++ GSSGS+N ++ TC
Sbjct: 60 VVENLPDLRPVPFNNVQKFVPHSMVVALGRDISGKLMATGGLLIGGSSGSYNPKLMSSTC 119
Query: 506 RNLESIE 486
+ E E
Sbjct: 120 KFSEVYE 126
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 28.7 bits (61), Expect = 5.2
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 2/174 (1%)
Frame = -3
Query: 620 FQCHELHQLLDKIGHKIVSLMLSGSSGSFNFTRIAETCRNLESIEFYSIQTATHEEETPF 441
F+ ++ L++KI IVS + + SG+F I R + Q H + P+
Sbjct: 203 FKAFDMQALINKITKSIVSPLPTKYSGAFR-GLIKSMLRKSPEHRPSAAQLLKHPQLQPY 261
Query: 440 NKLEHIEIIQGNLTSSCLKYLMTGSPKLKKLIIGDEIKLDDNDMARMLRRYKFENLEGIW 261
+ ++ ++ + T + L + + K+KK+ ++ D+ RM RR N +
Sbjct: 262 --VLQVQ-LKSSPTRNILPIHQSLTDKVKKMTFPSDVV--DSARRRMARRNSLGNERTVT 316
Query: 260 F--PNAPRLSLETVELLMESCPKLQSLGQLSGWRFTPDEMMLMRAVIASTNTDL 105
F P+ R S+ + + E QS+ LS + + +A+I T++ L
Sbjct: 317 FSKPSPERNSVSSTRSIKE-YTTTQSVKGLSVDSSEAGDEVTSKAIITKTSSIL 369
>10_06_0140 + 11147019-11147791,11148301-11150524
Length = 998
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 115 LVLAMTALMSIISSGVKRQPLSCPRLC-SFGQLSINSSTVSNERR 246
L LA+ + S ++QPL C +LC + G+ + T++ +R
Sbjct: 347 LPLALVTTAQFLQSRCQQQPLGCAKLCDNLGKHLVTEDTLARMKR 391
>10_01_0140 -
1674305-1674586,1674683-1674838,1675676-1676622,
1678976-1679054,1679168-1679207,1679580-1679767,
1679869-1680024,1680752-1681713,1681866-1681914
Length = 952
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -3
Query: 455 EETPFNKLEHIEIIQGN--LTSSCLKYLMTGSPKLKKLIIGDEIKLDDNDMARMLRRYKF 282
+ + FN + I GN + K L G P L++L + D I DD + L+ F
Sbjct: 668 DRSVFNSIYLRRIAFGNVFMDQGFFKQLQIGCPALERLYLDDCIVADDEISSNTLKVLTF 727
Query: 281 ENLEGIWFPNAPRLSLETVELL 216
+ E + + +S+ TV L
Sbjct: 728 DTTE-FCYEHRISISIPTVTTL 748
>03_05_0200 -
21911260-21911322,21911655-21911705,21911756-21911851,
21911947-21912045,21913213-21913526,21913621-21913696,
21913788-21915136,21915344-21915944
Length = 882
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 78 TRKLMATLDNDTCKKNNDDGXHE 10
T +L T+D+D CK N+D G E
Sbjct: 552 TDQLKVTVDDDICKTNSDQGSRE 574
>01_06_0625 - 30688456-30689880
Length = 474
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -3
Query: 638 KIKLNKFQCHELHQLLDKIGHKIVSLMLSGSSGSFNFTRIAETCRNLES 492
K+K N + HE + LD+ + V + GS G+F+ ++++E R +E+
Sbjct: 250 KLKENDAR-HECLEWLDRQPKQSVVFLCFGSRGTFSVSQLSEMARGIEN 297
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 547 RQVLSTLRESPRLVETWKA*NFIQYKRQHTKKKLHSINWSILK 419
++VL +L R+ + W NFI ++T KK + +N+S L+
Sbjct: 714 QEVLDSLNLQSRMGDAW---NFIWGSDKYTAKKFYKLNYSALQ 753
>01_01_0870 - 6789903-6792251
Length = 782
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 18 IHRHCFFCMCHCPVSPSVSLLEY 86
+H C C+ HC + P LL+Y
Sbjct: 585 LHEECEDCIIHCDIKPENILLDY 607
>12_02_0312 + 17395716-17398112
Length = 798
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -3
Query: 575 KIVSLMLSGSSGSFNF--TRIAETCRNLESIEFYSIQTATHEE 453
++++L+ SG SGS TR+++ L++IE Y + HEE
Sbjct: 285 ELMNLLPSGRSGSMILITTRLSKIASVLKTIEPYEVPKLPHEE 327
>10_08_0165 +
15356748-15356811,15357113-15357186,15357311-15357394,
15357508-15357602,15357737-15357790,15357791-15357896,
15358236-15358277,15358585-15358674,15358788-15358984,
15359355-15359413,15360166-15362252
Length = 983
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = -3
Query: 407 NLTSSCLKYLMTGSPKLKKLIIGDEIKLDDNDMARMLRRYKFENLEGIWFPNAPRLSLET 228
+LTS + GSP + ++G++ L DN ++ ++F + +
Sbjct: 167 HLTSINHELQKHGSPDMIMALVGNKADLHDNRSVSSQDAQEYAERNTMFFIETSAKTADN 226
Query: 227 VELLMESCPK--LQSLGQLSGWRFTPDEMM 144
+ L E C + +S+G W T + M+
Sbjct: 227 INQLFEVCIRSISESVGLNRNWSMTVETMI 256
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = -3
Query: 722 LCPLIETIYLEDPDQGVLQQIKELNCVNKIKLNKFQCHELHQLLDKIGHKIVSLMLS 552
LCP +E + ++DP K L + +++LN ++ E+ +L D+ + + L+LS
Sbjct: 1686 LCPRLERLDIDDPSILTTSFCKHLTSLQRLELN-YRGSEVARLTDE-QERALQLLLS 1740
>04_04_0292 +
24181486-24181515,24181729-24182616,24182702-24182854,
24183131-24183185,24184860-24185047,24185271-24185351
Length = 464
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = -3
Query: 542 GSFNFTRIAETCRNLESIEFYSIQTATHEEETPFNKLEHIEIIQGNLTSSCLKYLMTGSP 363
G+ +FT + TC+ LE ++ S + L +E++ S LK L P
Sbjct: 186 GNSDFTDVLSTCKKLEYLQLISCDFQPSVLQMEHPTLIKMELVVCTFGSVDLKSL----P 241
Query: 362 KLKKLIIGDEIKLDD 318
KL+ LI+ + L++
Sbjct: 242 KLRTLIVDTWMGLEE 256
>01_06_1472 -
37609732-37609851,37609883-37610104,37610542-37610922,
37612583-37612816,37613589-37613738,37613831-37614016,
37615058-37615120
Length = 451
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 25 VIVFFACVIVQCRHQFPCWNIPSGERTKSVLVLAMTALMSIISSGVKRQPLSCPR 189
V VF A V RHQFP +N +G +V ++ ++S++ + P PR
Sbjct: 49 VAVFCAFVARNLRHQFPAYN--AGYAILAVAIVLAIYVLSLLFITAAQDPGIVPR 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,142,143
Number of Sequences: 37544
Number of extensions: 353665
Number of successful extensions: 1021
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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