Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M12
         (751 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U33761-1|AAC50242.1|  435|Homo sapiens cyclin A/CDK2-associated ...    36   0.21 
BT006723-1|AAP35369.1|  270|Homo sapiens sorting nexin 11 protein.     31   5.8  
BC103721-1|AAI03722.1|  270|Homo sapiens sorting nexin 11 protein.     31   5.8  
BC000768-1|AAH00768.1|  270|Homo sapiens sorting nexin 11 protein.     31   5.8  
AK023932-1|BAB14732.1|  270|Homo sapiens protein ( Homo sapiens ...    31   5.8  
AF121861-1|AAD27834.1|  264|Homo sapiens sorting nexin 11 protein.     31   5.8  
U96629-1|AAB67601.1|  409|Homo sapiens unknown protein CIT987SK_...    30   7.7  
BC025267-1|AAH25267.1|  658|Homo sapiens integrator complex subu...    30   7.7  

>U33761-1|AAC50242.1|  435|Homo sapiens cyclin A/CDK2-associated p45
           protein.
          Length = 435

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 29/121 (23%), Positives = 56/121 (46%)
 Frame = -3

Query: 458 EEETPFNKLEHIEIIQGNLTSSCLKYLMTGSPKLKKLIIGDEIKLDDNDMARMLRRYKFE 279
           E  +PF +++ +++    +  S L  +++   KL+ L +  E++L D  +  + +     
Sbjct: 188 EHFSPF-RVQDMDLSNSVIEVSTLHGILSQCSKLQNLSL--ELRLSDPIVNTLAKNSNLV 244

Query: 278 NLEGIWFPNAPRLSLETVELLMESCPKLQSLGQLSGWRFTPDEMMLMRAVIASTNTDLVL 99
            L     P  P+  L+T    + SCP+L  L     + FT   + +  A ++ T T L L
Sbjct: 245 RLNLPGCPGFPKFPLQT---FLSSCPRLDELNLSWCFNFTEKHVQVAVAHVSETMTQLNL 301

Query: 98  S 96
           S
Sbjct: 302 S 302


>BT006723-1|AAP35369.1|  270|Homo sapiens sorting nexin 11 protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 172 PLSCPRLCSFGQLSINSSTVSNERRGAFGNH 264
           PLS P  C FG+    +ST+ + RR   G+H
Sbjct: 225 PLSSPLCCDFGRPKEGTSTLQSVRRAVGGDH 255


>BC103721-1|AAI03722.1|  270|Homo sapiens sorting nexin 11 protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 172 PLSCPRLCSFGQLSINSSTVSNERRGAFGNH 264
           PLS P  C FG+    +ST+ + RR   G+H
Sbjct: 225 PLSSPLCCDFGRPKEGTSTLQSVRRAVGGDH 255


>BC000768-1|AAH00768.1|  270|Homo sapiens sorting nexin 11 protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 172 PLSCPRLCSFGQLSINSSTVSNERRGAFGNH 264
           PLS P  C FG+    +ST+ + RR   G+H
Sbjct: 225 PLSSPLCCDFGRPKEGTSTLQSVRRAVGGDH 255


>AK023932-1|BAB14732.1|  270|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13870 fis, clone THYRO1001313, highly similar to
           Homo sapiens sorting nexin 11 (SNX11) mRNA. ).
          Length = 270

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 172 PLSCPRLCSFGQLSINSSTVSNERRGAFGNH 264
           PLS P  C FG+    +ST+ + RR   G+H
Sbjct: 225 PLSSPLCCDFGRPKEGTSTLQSVRRAVGGDH 255


>AF121861-1|AAD27834.1|  264|Homo sapiens sorting nexin 11 protein.
          Length = 264

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 172 PLSCPRLCSFGQLSINSSTVSNERRGAFGNH 264
           PLS P  C FG+    +ST+ + RR   G+H
Sbjct: 219 PLSSPLCCDFGRPKEGTSTLQSVRRAVGGDH 249


>U96629-1|AAB67601.1|  409|Homo sapiens unknown protein
           CIT987SK_2A8_1 protein.
          Length = 409

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
 Frame = -3

Query: 605 LHQLLDKIGHKIVSLMLSG--SSGSFNFTRI-AE-TCRNLESIEFYSIQTATHEEETPFN 438
           L+Q +D  G   V L      ++ S  F++I AE  C N +S  +       H E    N
Sbjct: 63  LYQYIDSAGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTN 122

Query: 437 KLEHIEIIQGNLTSSCLK--YLMTGSPKLK 354
           KL+H   I G+ ++   +   + TG P L+
Sbjct: 123 KLKHYPSIHGDFSNDFRQPCVVFTGHPSLR 152


>BC025267-1|AAH25267.1|  658|Homo sapiens integrator complex subunit
           9 protein.
          Length = 658

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
 Frame = -3

Query: 605 LHQLLDKIGHKIVSLMLSG--SSGSFNFTRI-AE-TCRNLESIEFYSIQTATHEEETPFN 438
           L+Q +D  G   V L      ++ S  F++I AE  C N +S  +       H E    N
Sbjct: 312 LYQYIDSAGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTN 371

Query: 437 KLEHIEIIQGNLTSSCLK--YLMTGSPKLK 354
           KL+H   I G+ ++   +   + TG P L+
Sbjct: 372 KLKHYPSIHGDFSNDFRQPCVVFTGHPSLR 401


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,460,512
Number of Sequences: 237096
Number of extensions: 1956351
Number of successful extensions: 4276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4276
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)