Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M09
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   5.6  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.6  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   7.4  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 75  WKICDFLECVNERGQXRRWQQLIIV 1
           WK  D LEC     + RRW  L+++
Sbjct: 92  WKNWDGLECPITHIELRRWAHLLLI 116


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 126 DLQXPEGXGTKEXEKWXWKICDFLECVNE 40
           DL  P    TK  +K+  K+ ++LE +NE
Sbjct: 10  DLDDPNSKNTKCPDKFEQKVEEYLEVLNE 38


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 264 LDKYLELIHL*CFCNSVRDCKGGHTDIIEPLKLTTSYFVNSFVSSTLF 407
           +DK L L+ L  F   +R+    ++  I  +    +YF+NSF+SST F
Sbjct: 715 IDK-LALVQLDKFQTEIRELYESYS--INKVVHHLNYFMNSFLSSTYF 759


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,953
Number of Sequences: 5004
Number of extensions: 42531
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)