Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M09
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888     32   0.47 
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    29   3.3  

>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
          Length = 748

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 255 HTKLDKYLELIHL*CFCNSVRDCKGGHTDIIEPLKLTTSYFVNSFV 392
           H K +    L HL C C+ V D K      IE + LT  + VN ++
Sbjct: 446 HEKSELTCHLEHLICVCSDVLDGKANLRKFIEEVCLTLEWTVNQYI 491


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 530 FYLMFAWMKWKQINE-GVCIKQRIISKYI 613
           FY +F W+++  +NE   CIKQ  ++ +I
Sbjct: 580 FYTLFPWVQYSAVNERSSCIKQYPVTSHI 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,459
Number of Sequences: 37544
Number of extensions: 213641
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)