Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M07
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0175 + 32152428-32153423,32153692-32153889,32154942-321551...   194   5e-50
07_03_1271 + 25356087-25356232,25356419-25356543,25356650-253566...    36   0.033
07_01_0379 + 2830475-2830614,2831180-2831304,2831510-2831556,283...    35   0.058
03_06_0215 + 32416097-32416236,32416727-32416851,32417092-324171...    33   0.18 
04_04_1206 + 31727931-31728048,31728492-31728538,31728782-317289...    31   1.2  
04_04_1438 - 33609242-33609349,33609571-33609663,33609840-336098...    29   3.8  
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566...    29   3.8  
06_01_1066 - 8656108-8657622                                           28   6.6  
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434...    28   8.7  

>03_06_0175 +
           32152428-32153423,32153692-32153889,32154942-32155121,
           32156224-32156481,32157310-32157381
          Length = 567

 Score =  194 bits (474), Expect = 5e-50
 Identities = 101/176 (57%), Positives = 129/176 (73%)
 Frame = -3

Query: 642 QATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGEYFF 463
           +ATAVY+VASYA+  NVPVIADGGI + GHI+K+L+LGASTVMMGS LAG+ EAPG Y +
Sbjct: 398 KATAVYKVASYAKDHNVPVIADGGISNSGHIVKALSLGASTVMMGSFLAGSHEAPGTYEY 457

Query: 462 SDGVRLKKYRGMGSLEAMESKDGKGSAMSRYFHKESDKHRVAQGVSGSIVDKGSVLRFLP 283
            DG R+KKYRGMGSLEAM     KGS  +RY   ++ K +VAQGV G++ DKGSVLRF+P
Sbjct: 458 KDGHRVKKYRGMGSLEAMT----KGSD-ARYL-GDTLKLKVAQGVVGAVADKGSVLRFIP 511

Query: 282 YLQAGMQHSCQDLGARSVSVLREMSHSGDLRFMKRTYSAQLEGNVHGLXAYEKRLF 115
           Y    ++   QDLGA S+    E+  S  ++   RT +AQ+EG +HGL +YEK+ F
Sbjct: 512 YTMQAVKQGFQDLGASSLQSAHELLRSETIKLEVRTGAAQVEGGIHGLVSYEKKAF 567



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = -3

Query: 708 LRVGMGSGSICITQEVMACG 649
           LRVGMGSGSIC TQEV A G
Sbjct: 310 LRVGMGSGSICTTQEVCAVG 329


>07_03_1271 +
           25356087-25356232,25356419-25356543,25356650-25356696,
           25356792-25356869,25356949-25357073,25357312-25357372,
           25357723-25357785,25358262-25358331,25358740-25358945,
           25359074-25359253
          Length = 366

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -3

Query: 594 VPVIADGGIQSVGHIIKSLALGASTVMMG 508
           VPV+ DGGI+    + K+LALGA  VM+G
Sbjct: 281 VPVLVDGGIRRGTDVFKALALGARAVMVG 309


>07_01_0379 +
           2830475-2830614,2831180-2831304,2831510-2831556,
           2831838-2831962,2832116-2832182,2832266-2832328,
           2832488-2832557,2832642-2832742,2832837-2832941,
           2833023-2833211
          Length = 343

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = -3

Query: 636 TAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGE 472
           +A+ +V   AR   +PV  DGG++    + K+LALGA+ V +G  +  +  A GE
Sbjct: 242 SALEEVVKAARG-QLPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAAGE 295


>03_06_0215 +
           32416097-32416236,32416727-32416851,32417092-32417138,
           32417445-32417569,32417673-32417739,32417808-32417900,
           32418024-32418093,32418193-32418398,32418489-32418677
          Length = 353

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 594 VPVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGE 472
           +PV  DGG++    + K+LALGA+ V +G  +     A GE
Sbjct: 265 IPVYLDGGVRRGTDVFKALALGAAGVFIGRPVVFALAAEGE 305


>04_04_1206 +
           31727931-31728048,31728492-31728538,31728782-31728906,
           31729067-31729133,31729221-31729283,31729429-31729498,
           31729751-31729770,31729840-31729956,31730046-31730227,
           31730586-31730640,31731604-31731697,31731791-31731900,
           31733167-31733193,31733510-31733701
          Length = 428

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 594 VPVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGEYFFSDGVRL 445
           VPV  D G +    + K+LALGAS V +G  +  +    GE    + +R+
Sbjct: 183 VPVFIDSGFRRGTDVFKALALGASGVFIGRPVLFSLAIDGEAGVRNALRM 232


>04_04_1438 -
           33609242-33609349,33609571-33609663,33609840-33609884,
           33610000-33610055,33610362-33610468,33610605-33610806,
           33611068-33611122,33611129-33611167,33611664-33611725,
           33611875-33611988,33612618-33612627,33612750-33612835,
           33613008-33613377
          Length = 448

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = -3

Query: 540 LALGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMESKDGKGSAMSRYFHK 361
           L  G+ +V+  S  + +S  P      +G   ++ R +    + E+KD +G        K
Sbjct: 37  LCPGSPSVLRASSSSPSSPQPTAGG-DEGEEEEEGRRLSKQSSWEAKDSEGDDYLYRLGK 95

Query: 360 ESDKHRVAQGVSGSIVDKGSVLRFL 286
           E+D   +A G    IVD   V  FL
Sbjct: 96  EADNMNIAVGARSGIVDDLFVGNFL 120


>03_05_0936 -
           28955486-28955683,28956320-28956424,28956550-28956693,
           28957078-28957356,28957480-28957587,28958288-28958567,
           28958724-28960029,28961301-28962342
          Length = 1153

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = -3

Query: 603 HFNVPVIAD---GGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYR 433
           H + P + D   G ++S+G  I S A    + +  SL+ G+SE   EYF    + +   R
Sbjct: 537 HPDDPFVEDDQHGSVRSIGVGISSDAADIGSEVRESLIGGSSEGDIEYFNESNLSVSGKR 596

Query: 432 GMGSLEAMESKDGKGSAMSRYFHKESDKHRVAQGVS 325
                   +  + KG+   +    ++ K  +  G S
Sbjct: 597 NSQQETEKKRINAKGAKQEQLNFIDNQKGVLPPGAS 632


>06_01_1066 - 8656108-8657622
          Length = 504

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 657 ACGCPQATAVYQVASYARHFNV-PVIADGGIQSVGHIIKSLALGAST-VMMGSL 502
           AC  PQ +     A++A HF + P I DG  + V  +++   LG  T V  G+L
Sbjct: 93  ACFRPQPSNRLPFATFAEHFRLSPHIDDGSFRFVTRMMERSGLGERTYVPRGNL 146


>02_05_0197 -
           26641356-26642188,26642312-26642398,26643373-26643452,
           26643948-26644120,26644227-26644308,26644623-26644758,
           26644777-26644833,26644905-26645120,26645939-26646335,
           26646458-26646544,26647063-26647324,26648892-26648972,
           26649176-26650350
          Length = 1221

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 404 LSIASKLPIPLYFLSRTPSEKKYSPGASDVPARSD 508
           ++ A+ +PIP+  ++   +  + SPG+S  PARSD
Sbjct: 551 MAAAAAIPIPIPCVAEPTAASRVSPGSS--PARSD 583


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,545,260
Number of Sequences: 37544
Number of extensions: 368310
Number of successful extensions: 965
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)