Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_M07
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical ... 235 2e-62
AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical ... 151 7e-37
AF016427-7|AAB65350.1| 358|Caenorhabditis elegans Hypothetical ... 80 1e-15
U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical pr... 34 0.12
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 31 0.84
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra... 29 4.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 5.9
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 5.9
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical
protein T22D1.3a protein.
Length = 534
Score = 235 bits (575), Expect = 2e-62
Identities = 115/199 (57%), Positives = 150/199 (75%), Gaps = 1/199 (0%)
Frame = -3
Query: 708 LRVGMGSGSICITQEVMACGCPQATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALG 529
LR+GMGSGSICITQ+VMA G Q TAVY VA YA +P++ADGGI+ VG+I K+++LG
Sbjct: 339 LRIGMGSGSICITQDVMAVGRAQGTAVYDVARYANQRGIPIVADGGIRDVGYITKAISLG 398
Query: 528 ASTVMMGSLLAGTSEAPGEYFFS-DGVRLKKYRGMGSLEAMESKDGKGSAMSRYFHKESD 352
AS VMMG LLA T+EAPGEYF+ GVR+KKYRGMGSL+AME+ S+ RYF ESD
Sbjct: 399 ASAVMMGGLLAATTEAPGEYFWGPGGVRVKKYRGMGSLDAMEA---HASSQDRYFTAESD 455
Query: 351 KHRVAQGVSGSIVDKGSVLRFLPYLQAGMQHSCQDLGARSVSVLREMSHSGDLRFMKRTY 172
+ +VAQGVS ++ D+GS +F+PYL G+QH QD+G RS+ RE +G ++F +R+
Sbjct: 456 QIKVAQGVSATMKDRGSCHKFIPYLIRGVQHGMQDIGVRSLRDFREKVDNGIVKFERRST 515
Query: 171 SAQLEGNVHGLXAYEKRLF 115
+AQLEG VH L ++EKRL+
Sbjct: 516 NAQLEGGVHSLHSFEKRLY 534
>AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical
protein T22D1.3b protein.
Length = 462
Score = 151 bits (365), Expect = 7e-37
Identities = 74/115 (64%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Frame = -3
Query: 708 LRVGMGSGSICITQEVMACGCPQATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALG 529
LR+GMGSGSICITQ+VMA G Q TAVY VA YA +P++ADGGI+ VG+I K+++LG
Sbjct: 339 LRIGMGSGSICITQDVMAVGRAQGTAVYDVARYANQRGIPIVADGGIRDVGYITKAISLG 398
Query: 528 ASTVMMGSLLAGTSEAPGEYFFS-DGVRLKKYRGMGSLEAMESKDGKGSAMSRYF 367
AS VMMG LLA T+EAPGEYF+ GVR+KKYRGMGSL+AME+ S+ RYF
Sbjct: 399 ASAVMMGGLLAATTEAPGEYFWGPGGVRVKKYRGMGSLDAMEA---HASSQDRYF 450
>AF016427-7|AAB65350.1| 358|Caenorhabditis elegans Hypothetical
protein F32D1.5 protein.
Length = 358
Score = 80.2 bits (189), Expect = 1e-15
Identities = 48/163 (29%), Positives = 84/163 (51%)
Frame = -3
Query: 708 LRVGMGSGSICITQEVMACGCPQATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALG 529
++VG+G GS+C T++ G PQ +AV + A A N V++DGG + G + K+ G
Sbjct: 177 VKVGIGPGSVCTTRKKAGVGYPQLSAVLECADAAHGLNGHVMSDGGCSNPGDVAKAFGAG 236
Query: 528 ASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMESKDGKGSAMSRYFHKESDK 349
A VM+G L AG ++ G+ +G + K + GM S AM+ G + +
Sbjct: 237 ADFVMIGGLFAGHDQSGGDLIEHNGKKFKLFYGMSSDTAMKKHHGSVA-----------E 285
Query: 348 HRVAQGVSGSIVDKGSVLRFLPYLQAGMQHSCQDLGARSVSVL 220
+R ++G + +I +G V + + G++ +C GA+ + L
Sbjct: 286 YRASEGKTVTIPYRGDVNGTVQDILGGIRSACTYTGAKHLKEL 328
>U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical
protein M02D8.3 protein.
Length = 915
Score = 33.9 bits (74), Expect = 0.12
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +2
Query: 260 CCMPACK*GRNLSTEPLSTILPLTP*A-TLCLSDSLWKYLLIADPLPSLLSIASKLPIPL 436
C A + +N+ + PL+T P+TP T C S++ L A+ +P S LP+P
Sbjct: 254 CANAAARYNKNVPSLPLNTPKPITPVVITECASNTNGSCSL-AEDMP------SALPVPT 306
Query: 437 YFLSRTPSEKKYSPGASDVPA--RSD 508
S++P E P S PA RSD
Sbjct: 307 AQSSKSPKESSKEPPKSLCPAINRSD 332
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 31.1 bits (67), Expect = 0.84
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = -3
Query: 543 SLALGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMESKDGKGSAMSRYFH 364
++ +G + G + G S+ + D R +Y + + EA K KG +
Sbjct: 438 TIKIGDQNIAEGLISRGLSKVV-RHRADDENRSSEYDTLLAAEANAEKGKKGLFADKTAE 496
Query: 363 KESDKHRVAQGVSGSIVDKGSVLRFLPYLQAG 268
K+ D HR+ Q ++G D +FLPYLQ G
Sbjct: 497 KK-DTHRI-QEITG---DLAKAKQFLPYLQRG 523
>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 12
protein.
Length = 1022
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 410 IASKLPIPLYFLSRTPSEKKYSPGASDVPARSDPI 514
I +KLP + ++R +K+ SP ASD P + P+
Sbjct: 868 IPNKLPQNMERMARKTRKKRSSPSASDPPVPTSPL 902
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Frame = +1
Query: 484 LRCPRKE*SHHYSRCPKGQ*F---------NNMTN*LNSTIGN--DWYIKMTSIGSYLVH 630
L C ++ + HY RCP G+ N+ ++ + T N D K +G YL
Sbjct: 2954 LFCMNQQCAQHYVRCPSGRCIPETWQCDGDNDCSDGWDETHTNCTDTAGKKICVGDYLFQ 3013
Query: 631 CSGLRTTTSHHFLCD 675
C L+ S F+CD
Sbjct: 3014 CDNLK-CISRAFICD 3027
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Frame = +1
Query: 484 LRCPRKE*SHHYSRCPKGQ*F---------NNMTN*LNSTIGN--DWYIKMTSIGSYLVH 630
L C ++ + HY RCP G+ N+ ++ + T N D K +G YL
Sbjct: 2954 LFCMNQQCAQHYVRCPSGRCIPETWQCDGDNDCSDGWDETHTNCTDTAGKKICVGDYLFQ 3013
Query: 631 CSGLRTTTSHHFLCD 675
C L+ S F+CD
Sbjct: 3014 CDNLK-CISRAFICD 3027
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 27.9 bits (59), Expect = 7.9
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -3
Query: 468 FFSDGVRLKKYRGMGSLEAMESKDGK-GSAMSRYFHKESDKHRVAQGVSGSIVDKGSVLR 292
F DGV + +RG +LE S + K G A SR FH D + VSG +LR
Sbjct: 79 FEMDGVNVSAHRGEFALELFMSGNAKIGIANSR-FH---DNKKGGVRVSGKFQSPNVILR 134
Query: 291 FLPYLQ-AGMQHSCQDLGARSVSV 223
+L+ +G + G S+SV
Sbjct: 135 DCRFLRNSGEIIIFNEFGQSSLSV 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,626,690
Number of Sequences: 27780
Number of extensions: 310316
Number of successful extensions: 767
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -