Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M06
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    29   0.87 
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    29   0.87 
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    28   1.5  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   6.1  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   6.1  

>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 199 DDPTNIALLWS-VFTQYNRDRKGSL 270
           DDP N+  +W+ VF Q+NR++ GSL
Sbjct: 212 DDP-NVLEIWNIVFIQFNREKDGSL 235


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 515 AVKSLAVSNTKDMLAVGLDGNSWPILLDVNTATILM 408
           AVK+L +SNT+D + +    +SWP  + +   ++ +
Sbjct: 412 AVKNLRLSNTRDNIVLNPSVDSWPSAIVMKVGSVAL 447


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +1

Query: 397 LSAVINIVAVLTSSKMGQLFPSRPTASISFVLETA-RDLTALPLGIAIS----ISL*NKQ 561
           + +++ IV  L S K  +L  S  T  +  +L+   R+L+   + I+ S    I   N+Q
Sbjct: 90  IDSLVPIVVDLPSKKQNRLLQSCITKHVDRLLDLCKRNLSTFTIDISSSWRQNIIENNEQ 149

Query: 562 RSFDCQSTTL 591
           + F+C ST +
Sbjct: 150 KEFECTSTAI 159


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 405 CHQYSGRIDVKQNGPTVSIKANSKHILCVRDS*RF 509
           CH+     ++KQN   VS K  S H+L VR   RF
Sbjct: 135 CHE--SYFELKQNENEVSEKDRSSHLLKVRPLLRF 167


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 214 YWLGHQSIRAAYSLTQEIVLVMYRCI 137
           Y  G QSI   Y  T+EI+L +YR I
Sbjct: 51  YTFGSQSISKLYWGTKEILLPVYRTI 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,761
Number of Sequences: 5004
Number of extensions: 57522
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)