Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M06
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657...    29   2.8  
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740...    28   6.4  
01_06_0267 - 28022317-28022580,28023232-28023515,28024067-280244...    28   8.5  

>02_05_1213 -
           34963971-34964658,34965030-34965270,34965347-34965736,
           34966515-34966781,34966881-34967249,34967931-34968014,
           34968113-34968226,34969952-34970018
          Length = 739

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 164 NRSSHVQMYFTQRRPSPVYSLDFDSTKLIAAAD 66
           NRSS+   +F  R P PV ++++ S ++  A D
Sbjct: 659 NRSSNPSGFFDNRNPLPVITMEYSSGRIEGARD 691


>02_05_1022 +
           33570664-33570976,33572206-33573440,33573873-33574013,
           33574242-33574796,33574914-33575015
          Length = 781

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 367 SRTTCLTFTVLSAVINIVAVLTSSKMGQLFPSRPTASISFVLETARDLTALP 522
           + TTCLT    SA     A  T++   ++FP+   +SI  +   A  +T++P
Sbjct: 243 THTTCLTMVPSSATARPAAKSTAATPERVFPATTASSIPSITSAAM-VTSVP 293


>01_06_0267 -
           28022317-28022580,28023232-28023515,28024067-28024463,
           28024563-28024736
          Length = 372

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 476 LAVGLDGNSWPILLDVNTATILMTAERTVNVKQVVRDIQWRNENT 342
           + VG  GNSW I    N A +L+    T+   +V+   +W+N N+
Sbjct: 326 IKVGAAGNSWKIGYGFNLAILLI----TIITLEVLLWTRWKNNNS 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,227,454
Number of Sequences: 37544
Number of extensions: 335416
Number of successful extensions: 766
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)