Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M06
         (715 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF174606-1|AAF04527.1|  406|Homo sapiens F-box protein Fbw3 prot...    56   1e-07
BC063415-1|AAH63415.1|  412|Homo sapiens F-box and WD repeat dom...    55   3e-07
AL627424-2|CAI41027.1|  412|Homo sapiens F-box and WD repeat dom...    55   3e-07
AL627144-3|CAI12232.1|  412|Homo sapiens F-box and WD repeat dom...    55   3e-07
AF281859-1|AAG22739.1|  412|Homo sapiens dactylin protein.             55   3e-07
BC007380-1|AAH07380.2|  293|Homo sapiens FBXW4 protein protein.        52   2e-06

>AF174606-1|AAF04527.1|  406|Homo sapiens F-box protein Fbw3
           protein.
          Length = 406

 Score = 56.0 bits (129), Expect = 1e-07
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
 Frame = -3

Query: 434 DVNTATILMTAERTVNVKQVVRDIQWRNENTIIYVTHSGMLNQIDTR--IQKIVYDAKDP 261
           D+N+  ++   +R    +  V D+ + +   ++   +   +   D R  ++K V + ++P
Sbjct: 270 DLNSGQLMTHLDRDFPPRAGVLDVIYESPFALLSCGYDTYVRYWDCRTSVRKCVMEWEEP 329

Query: 260 FLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRS-SHVQMYFTQRRPSPVYSLDFDSTK 84
             S LYC++TD N+ +  GSS YS   L+D   R+  H     + R  SPVY L   +  
Sbjct: 330 HNSTLYCLQTDGNHLLATGSSFYSVVRLWDRHQRACPHTFPLTSTRLGSPVYCLHLTTKH 389

Query: 83  LIAAADRGLTVLN 45
           L AA    L VL+
Sbjct: 390 LYAALSYNLHVLD 402


>BC063415-1|AAH63415.1|  412|Homo sapiens F-box and WD repeat domain
           containing 4 protein.
          Length = 412

 Score = 54.8 bits (126), Expect = 3e-07
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
 Frame = -3

Query: 530 IPNGNAVKSLAVSNTKDMLAVGLD--GNSWPILL-DVNTATILMTAERTVNVKQVVRDIQ 360
           I   + V S+A+S        G    G+  P+ + D+N+  ++            V D+ 
Sbjct: 241 IQTEDRVWSIAISPLLSSFVTGTACCGHFSPLRIWDLNSGQLMTHLGSDFPPGAGVLDVM 300

Query: 359 WRNENTIIYVTHSGMLNQIDTR--IQKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSR 186
           + +  T++   +   +   D R  ++K V + ++P  S LYC++TD N+ +  GSS Y  
Sbjct: 301 YESPFTLLSCGYDTYVRYWDLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGV 360

Query: 185 CVLFDARNRSS-HVQMYFTQRRPSPVYSLDFDSTKLIAAADRGLTVLNF 42
             L+D R R+  H     +    SPVY L   +  L AA    L VL+F
Sbjct: 361 VRLWDRRQRACLHAFPLTSTPLSSPVYCLRLTTKHLYAALSYNLHVLDF 409


>AL627424-2|CAI41027.1|  412|Homo sapiens F-box and WD repeat domain
           containing 4 protein.
          Length = 412

 Score = 54.8 bits (126), Expect = 3e-07
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
 Frame = -3

Query: 530 IPNGNAVKSLAVSNTKDMLAVGLD--GNSWPILL-DVNTATILMTAERTVNVKQVVRDIQ 360
           I   + V S+A+S        G    G+  P+ + D+N+  ++            V D+ 
Sbjct: 241 IQTEDRVWSIAISPLLSSFVTGTACCGHFSPLRIWDLNSGQLMTHLGSDFPPGAGVLDVM 300

Query: 359 WRNENTIIYVTHSGMLNQIDTR--IQKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSR 186
           + +  T++   +   +   D R  ++K V + ++P  S LYC++TD N+ +  GSS Y  
Sbjct: 301 YESPFTLLSCGYDTYVRYWDLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGV 360

Query: 185 CVLFDARNRSS-HVQMYFTQRRPSPVYSLDFDSTKLIAAADRGLTVLNF 42
             L+D R R+  H     +    SPVY L   +  L AA    L VL+F
Sbjct: 361 VRLWDRRQRACLHAFPLTSTPLSSPVYCLRLTTKHLYAALSYNLHVLDF 409


>AL627144-3|CAI12232.1|  412|Homo sapiens F-box and WD repeat domain
           containing 4 protein.
          Length = 412

 Score = 54.8 bits (126), Expect = 3e-07
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
 Frame = -3

Query: 530 IPNGNAVKSLAVSNTKDMLAVGLD--GNSWPILL-DVNTATILMTAERTVNVKQVVRDIQ 360
           I   + V S+A+S        G    G+  P+ + D+N+  ++            V D+ 
Sbjct: 241 IQTEDRVWSIAISPLLSSFVTGTACCGHFSPLRIWDLNSGQLMTHLGSDFPPGAGVLDVM 300

Query: 359 WRNENTIIYVTHSGMLNQIDTR--IQKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSR 186
           + +  T++   +   +   D R  ++K V + ++P  S LYC++TD N+ +  GSS Y  
Sbjct: 301 YESPFTLLSCGYDTYVRYWDLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGV 360

Query: 185 CVLFDARNRSS-HVQMYFTQRRPSPVYSLDFDSTKLIAAADRGLTVLNF 42
             L+D R R+  H     +    SPVY L   +  L AA    L VL+F
Sbjct: 361 VRLWDRRQRACLHAFPLTSTPLSSPVYCLRLTTKHLYAALSYNLHVLDF 409


>AF281859-1|AAG22739.1|  412|Homo sapiens dactylin protein.
          Length = 412

 Score = 54.8 bits (126), Expect = 3e-07
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
 Frame = -3

Query: 530 IPNGNAVKSLAVSNTKDMLAVGLD--GNSWPILL-DVNTATILMTAERTVNVKQVVRDIQ 360
           I   + V S+A+S        G    G+  P+ + D+N+  ++            V D+ 
Sbjct: 241 IQTEDRVWSIAISPLLSSFVTGTACCGHFSPLRIWDLNSGQLMTHLGSDFPPGAGVLDVM 300

Query: 359 WRNENTIIYVTHSGMLNQIDTR--IQKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSR 186
           + +  T++   +   +   D R  ++K V + ++P  S LYC++TD N+ +  GSS Y  
Sbjct: 301 YESPFTLLSCGYDTYVRYWDLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGV 360

Query: 185 CVLFDARNRSS-HVQMYFTQRRPSPVYSLDFDSTKLIAAADRGLTVLNF 42
             L+D R R+  H     +    SPVY L   +  L AA    L VL+F
Sbjct: 361 VRLWDRRQRACLHAFPLTSTPLSSPVYCLRLTTKHLYAALSYNLHVLDF 409


>BC007380-1|AAH07380.2|  293|Homo sapiens FBXW4 protein protein.
          Length = 293

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 6/169 (3%)
 Frame = -3

Query: 530 IPNGNAVKSLAVSNTKDMLAVGLD--GNSWPILL-DVNTATILMTAERTVNVKQVVRDIQ 360
           I   + V S+A+S        G    G+  P+ + D+N+  ++            V D+ 
Sbjct: 122 IQTEDRVWSIAISPLLSSFVTGTACCGHFSPLRIWDLNSGQLMTHLGSDFPPGAGVLDVM 181

Query: 359 WRNENTIIYVTHSGMLNQIDTR--IQKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSR 186
           + +  T++   +   +   D R  ++K V + ++P  S LYC++TD N+ +  GSS Y  
Sbjct: 182 YESPFTLLSCGYDTYVRYWDLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGV 241

Query: 185 CVLFDARNRSS-HVQMYFTQRRPSPVYSLDFDSTKLIAAADRGLTVLNF 42
              +D R R+  H     +    SPVY L   +  L AA    L VL+F
Sbjct: 242 VRPWDRRQRACLHAFPLTSTPLSSPVYCLRLTTKHLYAALSYNLHVLDF 290


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,289,967
Number of Sequences: 237096
Number of extensions: 1924791
Number of successful extensions: 3295
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3295
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)