Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M06
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical p...    29   2.5  
AL132904-21|CAE54912.1|  133|Caenorhabditis elegans Hypothetical...    29   2.5  

>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
 Frame = -3

Query: 350 ENTIIYVTHSGMLNQIDTRIQKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFD 171
           ENTI  ++HS +L   D   + I+        SRL+ V + +   + +GS +    +  D
Sbjct: 89  ENTIAMISHSSVLYFFDVSTKMIISSISLGVESRLFDV-SSNGTIVAIGSID-GVIIAGD 146

Query: 170 ARNRSSHVQMYFTQRRPSPVYSLDFDSTKLIAAADRGLTVLNFN-INGKAIR 18
            + + +       +R P+  +S+ F    L+A  D   TV  +N I+G  I+
Sbjct: 147 GKVQQTLKLDRLNRRDPTIAWSVLFVKPSLLACGDSRGTVTFWNPIDGSLIQ 198


>U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical
           protein F45E4.7c protein.
          Length = 784

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 443 ILLDVNTATILMTAERTVNVKQVVRDIQWRNENTIIYVTHSGMLNQIDTRIQKIVYD 273
           +L   N  T L+T  R      ++RD Q  + ++  +  H+GML+    R   IVYD
Sbjct: 238 VLRSSNAPTDLLTFIRNFPCGPLLRDCQNFHADSYSWERHAGMLDWYAGRYNLIVYD 294


>U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical
           protein F45E4.7a protein.
          Length = 868

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 443 ILLDVNTATILMTAERTVNVKQVVRDIQWRNENTIIYVTHSGMLNQIDTRIQKIVYD 273
           +L   N  T L+T  R      ++RD Q  + ++  +  H+GML+    R   IVYD
Sbjct: 322 VLRSSNAPTDLLTFIRNFPCGPLLRDCQNFHADSYSWERHAGMLDWYAGRYNLIVYD 378


>U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical
           protein C26E6.3 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = -1

Query: 532 LYPMVMQLNL*LSLTQRICLLLALMETV-------GPFCLTSIRPLY 413
           +YP +M  NL  + + R+C  LALM+ V       GPF    I PLY
Sbjct: 81  IYPAIMPANLTAAQSNRVCNALALMQCVASHRDTRGPFLHAHI-PLY 126


>AL132904-21|CAE54912.1|  133|Caenorhabditis elegans Hypothetical
           protein Y111B2A.28 protein.
          Length = 133

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = -3

Query: 521 GNAVKSLAVSNTKDMLAVGL-DGNSWPILLDVNTATILMTAERTVNVKQVVRDIQWRNEN 345
           GN V+SLA++ +    AVG  DG      +D N+   +  + + + + +V+    W  E 
Sbjct: 15  GNCVESLAMAPSHPWFAVGRNDGTMCIYEMDSNSPRSIFQSNQMMAIVKVI----WSMEG 70

Query: 344 TIIYVTHSGMLNQIDTRIQKIVYDAKDPFL 255
              YVT       ID  I+  ++DA+D  L
Sbjct: 71  NAPYVT----AGSIDGTIR--IFDARDSSL 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,440,665
Number of Sequences: 27780
Number of extensions: 322219
Number of successful extensions: 752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)