Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M05
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.77 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.8  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    27   3.1  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.1  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   7.1  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    26   7.1  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   9.4  

>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 78  VTRHVCHTGHQQLNATASMECLVNLKLTFKNPILFLFRILFKA 206
           + RH C  G  +  A A   CL N   TF+   L +  I+  +
Sbjct: 300 MARHCCEIGQSRFGARAIRACLENENATFEQQALVVASIIINS 342


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 136  SIEAVAFSCWCPVWQTCRVTVSAIRSPRAVVARHV 32
            ++E VAF C CP+  T  VT+S IR+   ++ + V
Sbjct: 1075 ALEIVAFLCSCPL--TSEVTLSVIRARPGLLVKMV 1107


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 256 KRILGNIKLHLKLLSPTIYNINDY 327
           KR+ GN ++H+K L   +YN+  +
Sbjct: 400 KRLNGNNRMHIKQLIKVVYNLKSF 423


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 280 LHLKLLSPTIYNINDYKNKLRGDPPLPLTLHSL 378
           LH  ++S   Y I  Y   ++GD PL   +H+L
Sbjct: 361 LHYYIMSTVTYYIPIYFQSIKGDGPLMSGVHTL 393


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 108  QQLNATASMECLVNLKLTFKNPILFLFRILFKADARRHVTQSYIVVLKEKT 260
            Q+++ +   ECL N    + NPI +L R  +       V  S   +L + T
Sbjct: 1557 QEMDMSTVAECLNNHPSLYSNPIHYLLRKAYHTTNASPVATSLNAILGQLT 1607


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 280 LHLKLLSPTIYNINDYKNKLRGDPPLPLTLHSL 378
           LH  ++S   Y I  Y   ++GD PL   +H+L
Sbjct: 361 LHYYIVSTITYYIPVYFQNIKGDGPLMSGVHTL 393


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 353 PSL--SPSTRCDANDELSNNIFK*NYSPDKNVNVIKKGKIFRK 475
           PSL   PS+  + +D +S ++F  NY+   N+N + K K  R+
Sbjct: 164 PSLIFDPSSS-EKSDSISGSLFDTNYTCPVNINGLSKQKSVRE 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,044
Number of Sequences: 5004
Number of extensions: 51874
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)