Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M05
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0548 - 11403442-11404205,11404520-11404811,11404917-114050...    30   1.8  
06_03_0006 - 15306302-15306805,15307758-15307893,15308909-153090...    28   7.4  

>02_02_0548 -
           11403442-11404205,11404520-11404811,11404917-11405016,
           11405049-11405458
          Length = 521

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -2

Query: 163 NVNFKFTRHSIEAVAFSCWCPVWQ----TCRVTVSAIRSPRAVVARHVSSP 23
           N++    RH+++     C C  WQ     CR  +S IRS R V   +  SP
Sbjct: 442 NMDLTTWRHTVDLTKQECSCKEWQLTGLPCRHDISFIRSLREVDLENYVSP 492


>06_03_0006 -
           15306302-15306805,15307758-15307893,15308909-15309087,
           15310097-15310230,15310712-15311210,15311372-15311720,
           15314597-15314649
          Length = 617

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 9   SEYDRGELTWRATT--ARGERMALTVTRHVCHTGHQQLNATASMECLVNL 152
           S ++ GE+TWR  T   + E +   +T H+      Q NA A      N+
Sbjct: 549 SHWEFGEITWRMDTLDMQTEEIQYNLTEHIAQMQEWQQNADAQFANFNNM 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,594,981
Number of Sequences: 37544
Number of extensions: 316137
Number of successful extensions: 719
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)