Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M05
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   5.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   7.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   10.0 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   10.0 

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 650 ARAGTPTDLPTASSVSAPTQILHYKH 573
           A    P  LPT  SV A    LH+ H
Sbjct: 449 ATTAAPPQLPTEESVDALCNTLHHWH 474


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 217 RLASALNKIRNRKSI 173
           R+ S+LN +RN KSI
Sbjct: 40  RVYSSLNSLRNHKSI 54


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 341 GATLPSLSPSTRCDANDELSNNIFK*N 421
           GA +  L  +TRC  +D  +NN  K N
Sbjct: 571 GANVNDLIMNTRCANSDNQNNNQNKHN 597


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = +1

Query: 313 NIND---YKNKLRGDPPLPLTL 369
           NI+D   Y  K+RG   LPLTL
Sbjct: 11  NISDELRYLEKVRGPKYLPLTL 32


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 277 KLHLKLLSPTIYNINDYKN 333
           K+   L + TI+N N+YKN
Sbjct: 313 KIISSLSNKTIHNNNNYKN 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,815
Number of Sequences: 438
Number of extensions: 3814
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)