Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M02
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...   168   8e-43
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...   148   1e-36
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   5.0  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   6.6  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   6.6  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.7  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score =  168 bits (408), Expect = 8e-43
 Identities = 81/233 (34%), Positives = 132/233 (56%), Gaps = 1/233 (0%)
 Frame = -3

Query: 749 VXDDIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFEL 570
           + DDIMD S  RRG PCWY  P VG   A  D+ ++ S+++     +FR    Y+ + EL
Sbjct: 93  IADDIMDASKTRRGQPCWYLMPGVG-NIAINDAFMVESAIYFLLKKHFRQESCYVDLIEL 151

Query: 569 FNETLWRTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAEN 393
           F++  ++T +GQ LD +T    + D S F+L +             + LPV+L + LA  
Sbjct: 152 FHDVTFQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAMHLAGV 211

Query: 392 VDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCT 213
              +  K AQDI + +G  FQ+QDD++DC+GD   TGK+GTDI + KC+W+   AL +CT
Sbjct: 212 ATPENLKCAQDILIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDNKCSWIINLALAKCT 271

Query: 212 EAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 54
             QR +    YG  +    +R+K ++E+L++   +++ E++    I + I+ +
Sbjct: 272 PEQRVILDDNYGRKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGV 324


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score =  148 bits (358), Expect = 1e-36
 Identities = 82/250 (32%), Positives = 129/250 (51%), Gaps = 3/250 (1%)
 Frame = -3

Query: 743 DDIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFELFN 564
           DDIMD S  RRG+ CWY    VG+  A  +S L+ + +       FR  P Y+ + + F 
Sbjct: 100 DDIMDQSIKRRGLDCWYL--VVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFR 157

Query: 563 ETLWRTSMGQHLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVD 387
           E  + T +GQ  D ++  + +    SF L +             + LP+   LLL+ N +
Sbjct: 158 EVTFLTELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSN 217

Query: 386 EKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEA 207
           +K Y +   +   +G  FQ+QDD++DCFGD    GKVG DIQ+ KCTWL   A +  +  
Sbjct: 218 QKAYDTTIKLSKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNKCTWLVCYAEKFASAD 277

Query: 206 QRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA--RV 33
           Q  + +A YG +   ++  IK+LY +L +P++Y   E  M D+I ++I+ I       + 
Sbjct: 278 QLNLLRAHYGKAGSENIAVIKQLYHELQIPELYHKFEDDMVDSISKEIDLIDESTGLKKC 337

Query: 32  LFKKLLXITY 3
           +F K   + Y
Sbjct: 338 IFTKFFQLIY 347


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 347 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 171
           IGT FQ+ DD +D    +   GK  G D++    T   + A ++  E    +       +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318

Query: 170 EPAHVERIKRLYE 132
            P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 158 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 66
           ++R ++  E++H+PQ+Y     + Y  I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 365 QDICLEIGTMFQIQDDFIDCFGDE 294
           Q +C+ IG M    DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 397 KMWMKKFINLLKTFAWK*ERCS 332
           K  +K+F NLLKTFA + ER +
Sbjct: 93  KRRIKRFRNLLKTFACRIERAN 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,778
Number of Sequences: 5004
Number of extensions: 60052
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)