Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_M02
(751 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 181 2e-45
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 180 4e-45
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 180 4e-45
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 180 4e-45
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 180 4e-45
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 165 1e-40
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 151 3e-36
M87434-1|AAA60607.1| 727|Homo sapiens 71 kDa 2'5' oligoadenylat... 30 7.7
M87284-1|AAA60606.1| 687|Homo sapiens 2'5' oligoadenylate synth... 30 7.7
BC049215-1|AAH49215.1| 687|Homo sapiens 2'-5'-oligoadenylate sy... 30 7.7
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 181 bits (441), Expect = 2e-45
Identities = 92/231 (39%), Positives = 131/231 (56%), Gaps = 1/231 (0%)
Frame = -3
Query: 749 VXDDIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFEL 570
V DDIMD S RRG CWY++P VG+ A D+ L+ + ++ R P Y+ + EL
Sbjct: 101 VADDIMDSSLTRRGQTCWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIEL 159
Query: 569 FNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAEN 393
F ++ ++T +GQ LD +T + D FT R + LP++ + +A
Sbjct: 160 FLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGI 219
Query: 392 VDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCT 213
EK + +A+ I LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+WL VQ LQR T
Sbjct: 220 DGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRAT 279
Query: 212 EAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIE 60
Q + K YG E V R+K LYE+L LP ++ E+ Y +I+ IE
Sbjct: 280 PEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE 330
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 180 bits (439), Expect = 4e-45
Identities = 92/231 (39%), Positives = 131/231 (56%), Gaps = 1/231 (0%)
Frame = -3
Query: 749 VXDDIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFEL 570
V DDIMD S RRG CWY++P VG+ A D+ L+ + ++ R P Y+ + EL
Sbjct: 94 VADDIMDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIEL 152
Query: 569 FNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAEN 393
F ++ ++T +GQ LD +T + D FT R + LP++ + +A
Sbjct: 153 FLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGI 212
Query: 392 VDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCT 213
EK + +A+ I LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+WL VQ LQR T
Sbjct: 213 DGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRAT 272
Query: 212 EAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIE 60
Q + K YG E V R+K LYE+L LP ++ E+ Y +I+ IE
Sbjct: 273 PEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE 323
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 180 bits (439), Expect = 4e-45
Identities = 92/231 (39%), Positives = 131/231 (56%), Gaps = 1/231 (0%)
Frame = -3
Query: 749 VXDDIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFEL 570
V DDIMD S RRG CWY++P VG+ A D+ L+ + ++ R P Y+ + EL
Sbjct: 168 VADDIMDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIEL 226
Query: 569 FNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAEN 393
F ++ ++T +GQ LD +T + D FT R + LP++ + +A
Sbjct: 227 FLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGI 286
Query: 392 VDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCT 213
EK + +A+ I LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+WL VQ LQR T
Sbjct: 287 DGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRAT 346
Query: 212 EAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIE 60
Q + K YG E V R+K LYE+L LP ++ E+ Y +I+ IE
Sbjct: 347 PEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE 397
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 180 bits (439), Expect = 4e-45
Identities = 92/231 (39%), Positives = 131/231 (56%), Gaps = 1/231 (0%)
Frame = -3
Query: 749 VXDDIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFEL 570
V DDIMD S RRG CWY++P VG+ A D+ L+ + ++ R P Y+ + EL
Sbjct: 167 VADDIMDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIEL 225
Query: 569 FNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAEN 393
F ++ ++T +GQ LD +T + D FT R + LP++ + +A
Sbjct: 226 FLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGI 285
Query: 392 VDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCT 213
EK + +A+ I LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+WL VQ LQR T
Sbjct: 286 DGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRAT 345
Query: 212 EAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIE 60
Q + K YG E V R+K LYE+L LP ++ E+ Y +I+ IE
Sbjct: 346 PEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE 396
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 180 bits (439), Expect = 4e-45
Identities = 92/231 (39%), Positives = 131/231 (56%), Gaps = 1/231 (0%)
Frame = -3
Query: 749 VXDDIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFEL 570
V DDIMD S RRG CWY++P VG+ A D+ L+ + ++ R P Y+ + EL
Sbjct: 167 VADDIMDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIEL 225
Query: 569 FNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAEN 393
F ++ ++T +GQ LD +T + D FT R + LP++ + +A
Sbjct: 226 FLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGI 285
Query: 392 VDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCT 213
EK + +A+ I LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+WL VQ LQR T
Sbjct: 286 DGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRAT 345
Query: 212 EAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIE 60
Q + K YG E V R+K LYE+L LP ++ E+ Y +I+ IE
Sbjct: 346 PEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE 396
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 165 bits (401), Expect = 1e-40
Identities = 88/231 (38%), Positives = 123/231 (53%), Gaps = 1/231 (0%)
Frame = -3
Query: 749 VXDDIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFEL 570
V DDIMD S RRG CWY++P VG+ A D+ L+ + ++ R P Y+ + EL
Sbjct: 96 VADDIMDSSLTRRGQICWYQKPGVGLD-AIDDANLLEACIYPLLKLYCREQPYYLNLIEL 154
Query: 569 FNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAEN 393
F ++ ++T +GQ LD +T + D FT R LP++
Sbjct: 155 FLQSSYQTEIGQTLDLLTXPQGNVDLVRFTEKRYISIVKYKTALSSSYLPIAAAXXXXGI 214
Query: 392 VDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCT 213
V EK + +A I LE+G QIQDD+++ FGD TGK+GTDIQ+ KC L VQ L R T
Sbjct: 215 VXEKEHANAXKILLEMGEFSQIQDDYLELFGDPSVTGKIGTDIQDXKCNCLXVQCLXRAT 274
Query: 212 EAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIE 60
Q + K YG E V R+K LYE+L LP ++ E+ Y +I+ IE
Sbjct: 275 PEQYQILKENYGQKEAEKVPRVKALYEELDLPAVFLQYEEDSYSHIMALIE 325
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 151 bits (365), Expect = 3e-36
Identities = 81/231 (35%), Positives = 122/231 (52%), Gaps = 1/231 (0%)
Frame = -3
Query: 749 VXDDIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFEL 570
V DDIMD S +G WY++ +G+ A D++L+ + ++ R P Y+ + EL
Sbjct: 69 VADDIMDSSLTCQGQISWYQKLGMGLD-AINDAILLEACIYCLLKLYCREQPYYLNLMEL 127
Query: 569 FNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAEN 393
F + ++T +GQ LD +T + D T R + LPV+ + ++
Sbjct: 128 FQQNSYQTEIGQTLDLITTPQGNVDLRRCTEKRHKSVVKYKTAFYSFYLPVAAAMYMSRM 187
Query: 392 VDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCT 213
D+K + SA+ I LEI FQIQDD++D GD TG+VG D Q+ KC+WL VQ L + T
Sbjct: 188 DDKKEHTSAKKILLEIQEFFQIQDDYLDFSGDPSVTGRVGNDFQDNKCSWLVVQCLLQAT 247
Query: 212 EAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIE 60
Q + K Y E V R+K LYE+L LP ++ EK Y +++ IE
Sbjct: 248 PEQYQILKENYRQKEAEKVARVKALYEELDLPAVFLQYEKDSYSHVMGLIE 298
>M87434-1|AAA60607.1| 727|Homo sapiens 71 kDa 2'5' oligoadenylate
synthetase protein.
Length = 727
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 277 LVQIYKSANVLGWQFKRCSAVLKHNVQYSKP 185
L+ +YKS+++ G +F C VL+ N S+P
Sbjct: 506 LIDLYKSSDLPGGEFSTCFTVLQRNFIRSRP 536
>M87284-1|AAA60606.1| 687|Homo sapiens 2'5' oligoadenylate
synthetase protein.
Length = 687
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 277 LVQIYKSANVLGWQFKRCSAVLKHNVQYSKP 185
L+ +YKS+++ G +F C VL+ N S+P
Sbjct: 506 LIDLYKSSDLPGGEFSTCFTVLQRNFIRSRP 536
>BC049215-1|AAH49215.1| 687|Homo sapiens 2'-5'-oligoadenylate
synthetase 2, 69/71kDa protein.
Length = 687
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 277 LVQIYKSANVLGWQFKRCSAVLKHNVQYSKP 185
L+ +YKS+++ G +F C VL+ N S+P
Sbjct: 506 LIDLYKSSDLPGGEFSTCFTVLQRNFIRSRP 536
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,526,767
Number of Sequences: 237096
Number of extensions: 2066553
Number of successful extensions: 3972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3958
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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