Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_M02
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81106-1|CAB03221.2| 352|Caenorhabditis elegans Hypothetical pr... 150 1e-36
Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical p... 29 3.5
Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical p... 29 3.5
Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical p... 29 3.5
U80443-7|AAB37678.2| 393|Caenorhabditis elegans Coenzyme q (ubi... 29 3.5
AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication l... 29 3.5
AC025721-13|AAR85897.1| 139|Caenorhabditis elegans Hypothetical... 29 4.7
Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical p... 28 6.2
Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical p... 28 6.2
>Z81106-1|CAB03221.2| 352|Caenorhabditis elegans Hypothetical
protein R06C1.2 protein.
Length = 352
Score = 150 bits (363), Expect = 1e-36
Identities = 85/240 (35%), Positives = 132/240 (55%), Gaps = 7/240 (2%)
Frame = -3
Query: 749 VXDDIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFEL 570
+ DDIMD S RRG PCW+RR VG++ A D+ ++ S + + + N ++ E
Sbjct: 97 IADDIMDNSETRRGKPCWFRREGVGMS-AINDAFIMDSFVEDILRLALPGHVNLDRLCEA 155
Query: 569 FNETLWRTSMGQHLDHVTGNRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENV 390
+ ++ +T +GQ LD + N+ SSFT DR P+ + L++++ +
Sbjct: 156 YRKSKQKTLIGQFLDTSSVNQ---ISSFTWDRYELMVENKTSHYTVFHPIQMALIISDVL 212
Query: 389 DEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTE 210
+ S + + +IG +FQ QDDF+D +GD TGK+GTDIQ+ KCTWLAV+ALQ+ +
Sbjct: 213 --AYHGSVKKVAYQIGFLFQSQDDFLDVYGDPKITGKIGTDIQDGKCTWLAVRALQKMHK 270
Query: 209 AQR-------TVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIP 51
FK +GS +P VE+IKR+Y++L L Q ++ EK I + I IP
Sbjct: 271 TPEKWGAKLIEEFKTSFGSVDPEKVEKIKRIYDELQLKQEFRRFEKHFSGEIKKSISEIP 330
>Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -1
Query: 325 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 179
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -1
Query: 325 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 179
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical
protein ZK632.1b protein.
Length = 516
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -1
Query: 325 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 179
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 187 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 234
>U80443-7|AAB37678.2| 393|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 1 protein.
Length = 393
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 407 LLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQ 261
+LA+ D K+++ A + +G FQ+ DD +D + GK V D++
Sbjct: 256 ILADGSDLKLHEIAFEYGRNLGIAFQLADDLLDFIATADEMGKPVAADLK 305
>AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication
licensing factor MCM2/3/5-type protein protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -1
Query: 325 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 179
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>AC025721-13|AAR85897.1| 139|Caenorhabditis elegans Hypothetical
protein Y48G8AL.15 protein.
Length = 139
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 116 QIY-KHQEKAMYDNIIRQIENIPIEAARV 33
Q+Y +HQ K YD ++R I + P+ A RV
Sbjct: 56 QLYAQHQGKFFYDRLVRHISSGPVIAMRV 84
>Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical
protein C50B6.14b protein.
Length = 420
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 158 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 54
+ER +R+ +DLHL I K DNI++ IE++
Sbjct: 383 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 417
>Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical
protein C50B6.14a protein.
Length = 399
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 158 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 54
+ER +R+ +DLHL I K DNI++ IE++
Sbjct: 362 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,875,634
Number of Sequences: 27780
Number of extensions: 341659
Number of successful extensions: 971
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -