Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_M01
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   6.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.3  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   8.3  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   8.3  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
 Frame = -2

Query: 701 SNYKLETSS--FSLQFLIIIRIAKFNQI--TTDLVSSFQS--PILESNILF-FYLYES*Q 543
           S Y L TS+  +    L    IAK  Q+  +  LVS+ +S   IL + +L  FYL+++  
Sbjct: 151 SAYSLVTSTPAYIQNGLDTFTIAKLRQVYGSNSLVSTKKSIVTILLNEVLHPFYLFQAVS 210

Query: 542 SYVVFCT*FIYLSC 501
             +  C  F++ SC
Sbjct: 211 VLIWLCDSFVFYSC 224


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -2

Query: 695 YKLETSSFSLQFLIIIRI-----AKFNQITTDLVSSFQSPILESNILFFYL 558
           Y ++ +SFS+  +  +R+     AK+ QI  DLV    S +  S+ L  YL
Sbjct: 20  YLVDCTSFSMNSVTCLRLMQLLLAKYYQIPIDLVGEKLSIVSASSCLLQYL 70


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 689 LETSSFSLQFLIIIRIAKFNQITTDLVS 606
           +  SSFSLQ ++II     N    DL+S
Sbjct: 431 ISASSFSLQLMVIITAISDNLTNDDLLS 458


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 546 LRLIQIEKKYIRFKDWRLETGDEVCSN 626
           +  +Q+ +++ R K W  E G E C+N
Sbjct: 115 MEAVQVPRQWKRNKAWNTENGLENCAN 141


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 485 LLYFSLMYIVMSYVIYICTYIA-YN 414
           LLY S++++ ++YV+ I  Y+  YN
Sbjct: 33  LLYISIIFLFLNYVVDIVCYVKNYN 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,321
Number of Sequences: 5004
Number of extensions: 56444
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)